Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC21.3■■□□□ 1
SHROOM3Q8TF72 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SHROOM3Q8TF72 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SHROOM3Q8TF72 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC21.3■■□□□ 1
SHROOM3Q8TF72 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SHROOM3Q8TF72 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
SHROOM3Q8TF72 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SHROOM3Q8TF72 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC21.3■■□□□ 1
SHROOM3Q8TF72 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC21.3■■□□□ 1
SHROOM3Q8TF72 TMEM191A-211ENST00000637163 1067 ntBASIC21.3■■□□□ 1
SHROOM3Q8TF72 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SHROOM3Q8TF72 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
SHROOM3Q8TF72 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC21.29■■□□□ 1
SHROOM3Q8TF72 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
SHROOM3Q8TF72 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC21.29■■□□□ 1
SHROOM3Q8TF72 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SHROOM3Q8TF72 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SHROOM3Q8TF72 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC21.29■■□□□ 1
SHROOM3Q8TF72 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
SHROOM3Q8TF72 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC21.29■■□□□ 1
SHROOM3Q8TF72 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC21.29■■□□□ 1
SHROOM3Q8TF72 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SHROOM3Q8TF72 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SHROOM3Q8TF72 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SHROOM3Q8TF72 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
SHROOM3Q8TF72 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC21.29■■□□□ 1
SHROOM3Q8TF72 AP001160.3-201ENST00000601484 763 ntBASIC21.29■■□□□ 1
SHROOM3Q8TF72 WWOX-218ENST00000627394 894 ntTSL 5 BASIC21.29■■□□□ 1
SHROOM3Q8TF72 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC21.29■■□□□ 1
SHROOM3Q8TF72 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SHROOM3Q8TF72 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
SHROOM3Q8TF72 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SHROOM3Q8TF72 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC21.28■■□□□ 1
SHROOM3Q8TF72 STX7-201ENST00000367937 1090 ntTSL 5 BASIC21.28■■□□□ 1
SHROOM3Q8TF72 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
SHROOM3Q8TF72 CNN2P6-201ENST00000439038 900 ntBASIC21.28■■□□□ 1
SHROOM3Q8TF72 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC21.28■■□□□ 1
SHROOM3Q8TF72 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC21.28■■□□□ 1
SHROOM3Q8TF72 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC21.28■■□□□ 1
SHROOM3Q8TF72 GXYLT1P5-201ENST00000614548 1189 ntBASIC21.28■■□□□ 1
SHROOM3Q8TF72 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC21.28■■□□□ 1
SHROOM3Q8TF72 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC21.28■■□□□ 1
SHROOM3Q8TF72 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC21.28■■□□□ 1
SHROOM3Q8TF72 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC21.28■■□□□ 1
SHROOM3Q8TF72 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
SHROOM3Q8TF72 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
SHROOM3Q8TF72 AC120498.10-201ENST00000621827 505 ntBASIC21.28■■□□□ 1
SHROOM3Q8TF72 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SHROOM3Q8TF72 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC21.28■■□□□ 1
SHROOM3Q8TF72 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC21.28■■□□□ 1
SHROOM3Q8TF72 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC21.27■■□□□ 1
SHROOM3Q8TF72 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
SHROOM3Q8TF72 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC21.27■■□□□ 1
SHROOM3Q8TF72 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
SHROOM3Q8TF72 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC21.27■■□□□ 1
SHROOM3Q8TF72 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SHROOM3Q8TF72 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SHROOM3Q8TF72 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SHROOM3Q8TF72 PARP1-202ENST00000366792 553 ntTSL 3 BASIC21.27■■□□□ 1
SHROOM3Q8TF72 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC21.27■■□□□ 1
SHROOM3Q8TF72 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC21.27■■□□□ 1
SHROOM3Q8TF72 MFSD11-216ENST00000590393 1141 ntBASIC21.27■■□□□ 1
SHROOM3Q8TF72 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC21.27■■□□□ 1
SHROOM3Q8TF72 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC21.27■■□□□ 1
SHROOM3Q8TF72 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SHROOM3Q8TF72 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC21.27■■□□□ 1
SHROOM3Q8TF72 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SHROOM3Q8TF72 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SHROOM3Q8TF72 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
SHROOM3Q8TF72 AL049796.1-201ENST00000565336 1766 ntBASIC21.27■□□□□ 0.99
SHROOM3Q8TF72 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
SHROOM3Q8TF72 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
SHROOM3Q8TF72 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
SHROOM3Q8TF72 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
SHROOM3Q8TF72 AC007322.3-201ENST00000426526 701 ntBASIC21.27■□□□□ 0.99
SHROOM3Q8TF72 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
SHROOM3Q8TF72 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
SHROOM3Q8TF72 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
SHROOM3Q8TF72 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
SHROOM3Q8TF72 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC21.26■□□□□ 0.99
SHROOM3Q8TF72 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SHROOM3Q8TF72 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SHROOM3Q8TF72 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
SHROOM3Q8TF72 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC21.26■□□□□ 0.99
SHROOM3Q8TF72 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
SHROOM3Q8TF72 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC21.26■□□□□ 0.99
SHROOM3Q8TF72 NTF6G-201ENST00000591094 616 ntBASIC21.26■□□□□ 0.99
SHROOM3Q8TF72 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SHROOM3Q8TF72 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
SHROOM3Q8TF72 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
SHROOM3Q8TF72 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SHROOM3Q8TF72 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SHROOM3Q8TF72 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SHROOM3Q8TF72 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SHROOM3Q8TF72 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC21.25■□□□□ 0.99
SHROOM3Q8TF72 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SHROOM3Q8TF72 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC21.25■□□□□ 0.99
SHROOM3Q8TF72 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC21.25■□□□□ 0.99
SHROOM3Q8TF72 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SHROOM3Q8TF72 RBM17P2-201ENST00000616397 1405 ntBASIC21.25■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 66.8 ms