Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
PTCHD3Q3KNS1 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
PTCHD3Q3KNS1 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
PTCHD3Q3KNS1 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PTCHD3Q3KNS1 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PTCHD3Q3KNS1 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
PTCHD3Q3KNS1 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PTCHD3Q3KNS1 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
PTCHD3Q3KNS1 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC20.37■□□□□ 0.85
PTCHD3Q3KNS1 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
PTCHD3Q3KNS1 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC20.37■□□□□ 0.85
PTCHD3Q3KNS1 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
PTCHD3Q3KNS1 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
PTCHD3Q3KNS1 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
PTCHD3Q3KNS1 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
PTCHD3Q3KNS1 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PTCHD3Q3KNS1 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PTCHD3Q3KNS1 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
PTCHD3Q3KNS1 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
PTCHD3Q3KNS1 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
PTCHD3Q3KNS1 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
PTCHD3Q3KNS1 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
PTCHD3Q3KNS1 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
PTCHD3Q3KNS1 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
PTCHD3Q3KNS1 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PTCHD3Q3KNS1 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PTCHD3Q3KNS1 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC20.36■□□□□ 0.85
PTCHD3Q3KNS1 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC20.36■□□□□ 0.85
PTCHD3Q3KNS1 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
PTCHD3Q3KNS1 HSCB-202ENST00000398941 955 ntTSL 2 BASIC20.36■□□□□ 0.85
PTCHD3Q3KNS1 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
PTCHD3Q3KNS1 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC20.36■□□□□ 0.85
PTCHD3Q3KNS1 AC080038.1-201ENST00000611274 1154 ntBASIC20.36■□□□□ 0.85
PTCHD3Q3KNS1 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
PTCHD3Q3KNS1 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
PTCHD3Q3KNS1 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PTCHD3Q3KNS1 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PTCHD3Q3KNS1 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
PTCHD3Q3KNS1 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC20.35■□□□□ 0.85
PTCHD3Q3KNS1 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PTCHD3Q3KNS1 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
PTCHD3Q3KNS1 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC20.35■□□□□ 0.85
PTCHD3Q3KNS1 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC20.35■□□□□ 0.85
PTCHD3Q3KNS1 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC20.35■□□□□ 0.85
PTCHD3Q3KNS1 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PTCHD3Q3KNS1 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
PTCHD3Q3KNS1 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
PTCHD3Q3KNS1 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PTCHD3Q3KNS1 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
PTCHD3Q3KNS1 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC20.35■□□□□ 0.85
PTCHD3Q3KNS1 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
PTCHD3Q3KNS1 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
PTCHD3Q3KNS1 AC061975.6-201ENST00000579045 1553 ntBASIC20.34■□□□□ 0.85
PTCHD3Q3KNS1 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC20.34■□□□□ 0.85
PTCHD3Q3KNS1 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC20.34■□□□□ 0.85
PTCHD3Q3KNS1 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
PTCHD3Q3KNS1 SERP1-208ENST00000491660 830 ntTSL 2 BASIC20.34■□□□□ 0.85
PTCHD3Q3KNS1 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC20.34■□□□□ 0.85
PTCHD3Q3KNS1 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC20.34■□□□□ 0.85
PTCHD3Q3KNS1 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC20.34■□□□□ 0.85
PTCHD3Q3KNS1 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
PTCHD3Q3KNS1 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
PTCHD3Q3KNS1 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC20.34■□□□□ 0.85
PTCHD3Q3KNS1 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
PTCHD3Q3KNS1 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PTCHD3Q3KNS1 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
PTCHD3Q3KNS1 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
PTCHD3Q3KNS1 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
PTCHD3Q3KNS1 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
PTCHD3Q3KNS1 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
PTCHD3Q3KNS1 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
PTCHD3Q3KNS1 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
PTCHD3Q3KNS1 AC104187.1-201ENST00000607510 612 ntBASIC20.33■□□□□ 0.85
PTCHD3Q3KNS1 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
PTCHD3Q3KNS1 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC20.33■□□□□ 0.84
PTCHD3Q3KNS1 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
PTCHD3Q3KNS1 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC20.33■□□□□ 0.84
PTCHD3Q3KNS1 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
PTCHD3Q3KNS1 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
PTCHD3Q3KNS1 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
PTCHD3Q3KNS1 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC20.32■□□□□ 0.84
PTCHD3Q3KNS1 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
PTCHD3Q3KNS1 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC20.32■□□□□ 0.84
PTCHD3Q3KNS1 AC138907.5-202ENST00000569484 235 ntBASIC20.32■□□□□ 0.84
PTCHD3Q3KNS1 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC20.32■□□□□ 0.84
PTCHD3Q3KNS1 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
PTCHD3Q3KNS1 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
PTCHD3Q3KNS1 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PTCHD3Q3KNS1 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PTCHD3Q3KNS1 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
PTCHD3Q3KNS1 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC20.32■□□□□ 0.84
PTCHD3Q3KNS1 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
PTCHD3Q3KNS1 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
PTCHD3Q3KNS1 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PTCHD3Q3KNS1 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
PTCHD3Q3KNS1 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC20.31■□□□□ 0.84
PTCHD3Q3KNS1 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PTCHD3Q3KNS1 BID-214ENST00000617586 542 ntTSL 5 BASIC20.31■□□□□ 0.84
PTCHD3Q3KNS1 WWOX-218ENST00000627394 894 ntTSL 5 BASIC20.31■□□□□ 0.84
PTCHD3Q3KNS1 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 16.7 ms