Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HLA-DQA1P01909 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HLA-DQA1P01909 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC15.66■□□□□ 0.1
HLA-DQA1P01909 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HLA-DQA1P01909 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HLA-DQA1P01909 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC15.66■□□□□ 0.1
HLA-DQA1P01909 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
HLA-DQA1P01909 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HLA-DQA1P01909 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
HLA-DQA1P01909 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
HLA-DQA1P01909 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC15.66■□□□□ 0.1
HLA-DQA1P01909 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
HLA-DQA1P01909 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HLA-DQA1P01909 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HLA-DQA1P01909 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
HLA-DQA1P01909 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HLA-DQA1P01909 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
HLA-DQA1P01909 AC090340.1-201ENST00000620778 4980 ntBASIC15.66■□□□□ 0.1
HLA-DQA1P01909 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
HLA-DQA1P01909 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HLA-DQA1P01909 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
HLA-DQA1P01909 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
HLA-DQA1P01909 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC15.66■□□□□ 0.1
HLA-DQA1P01909 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
HLA-DQA1P01909 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HLA-DQA1P01909 AC020907.5-201ENST00000624372 1936 ntBASIC15.66■□□□□ 0.1
HLA-DQA1P01909 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HLA-DQA1P01909 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
HLA-DQA1P01909 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HLA-DQA1P01909 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HLA-DQA1P01909 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
HLA-DQA1P01909 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HLA-DQA1P01909 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC15.65■□□□□ 0.1
HLA-DQA1P01909 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HLA-DQA1P01909 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC15.65■□□□□ 0.1
HLA-DQA1P01909 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC15.65■□□□□ 0.1
HLA-DQA1P01909 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC15.65■□□□□ 0.1
HLA-DQA1P01909 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HLA-DQA1P01909 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HLA-DQA1P01909 AC010980.1-201ENST00000587192 1142 ntBASIC15.65■□□□□ 0.1
HLA-DQA1P01909 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HLA-DQA1P01909 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
HLA-DQA1P01909 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
HLA-DQA1P01909 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC15.65■□□□□ 0.1
HLA-DQA1P01909 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
HLA-DQA1P01909 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC15.65■□□□□ 0.1
HLA-DQA1P01909 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HLA-DQA1P01909 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC15.64■□□□□ 0.1
HLA-DQA1P01909 AC027702.1-201ENST00000563810 1770 ntBASIC15.64■□□□□ 0.1
HLA-DQA1P01909 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
HLA-DQA1P01909 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC15.64■□□□□ 0.09
HLA-DQA1P01909 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
HLA-DQA1P01909 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC15.64■□□□□ 0.09
HLA-DQA1P01909 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
HLA-DQA1P01909 AIRN-201ENST00000601203 4374 ntBASIC15.64■□□□□ 0.09
HLA-DQA1P01909 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
HLA-DQA1P01909 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
HLA-DQA1P01909 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
HLA-DQA1P01909 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC15.64■□□□□ 0.09
HLA-DQA1P01909 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
HLA-DQA1P01909 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
HLA-DQA1P01909 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
HLA-DQA1P01909 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC15.64■□□□□ 0.09
HLA-DQA1P01909 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
HLA-DQA1P01909 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
HLA-DQA1P01909 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
HLA-DQA1P01909 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
HLA-DQA1P01909 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
HLA-DQA1P01909 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
HLA-DQA1P01909 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
HLA-DQA1P01909 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC15.63■□□□□ 0.09
HLA-DQA1P01909 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
HLA-DQA1P01909 USP39-204ENST00000409766 2033 ntTSL 2 BASIC15.63■□□□□ 0.09
HLA-DQA1P01909 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
HLA-DQA1P01909 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC15.63■□□□□ 0.09
HLA-DQA1P01909 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
HLA-DQA1P01909 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
HLA-DQA1P01909 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
HLA-DQA1P01909 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
HLA-DQA1P01909 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
HLA-DQA1P01909 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC15.63■□□□□ 0.09
HLA-DQA1P01909 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC15.63■□□□□ 0.09
HLA-DQA1P01909 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC15.63■□□□□ 0.09
HLA-DQA1P01909 LONRF2P2-201ENST00000439212 571 ntBASIC15.63■□□□□ 0.09
HLA-DQA1P01909 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
HLA-DQA1P01909 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC15.63■□□□□ 0.09
HLA-DQA1P01909 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
HLA-DQA1P01909 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC15.63■□□□□ 0.09
HLA-DQA1P01909 AC004687.1-201ENST00000579003 1625 ntBASIC15.63■□□□□ 0.09
HLA-DQA1P01909 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
HLA-DQA1P01909 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
HLA-DQA1P01909 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
HLA-DQA1P01909 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC15.63■□□□□ 0.09
HLA-DQA1P01909 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
HLA-DQA1P01909 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC15.63■□□□□ 0.09
HLA-DQA1P01909 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
HLA-DQA1P01909 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC15.63■□□□□ 0.09
HLA-DQA1P01909 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC15.63■□□□□ 0.09
HLA-DQA1P01909 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC15.63■□□□□ 0.09
HLA-DQA1P01909 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms