Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
PDLIM1O00151 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
PDLIM1O00151 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC19.76■□□□□ 0.75
PDLIM1O00151 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
PDLIM1O00151 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC19.76■□□□□ 0.75
PDLIM1O00151 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
PDLIM1O00151 AC241377.3-202ENST00000626088 1088 ntBASIC19.76■□□□□ 0.75
PDLIM1O00151 AC241585.3-202ENST00000628937 1088 ntBASIC19.76■□□□□ 0.75
PDLIM1O00151 AC245100.8-202ENST00000629247 1058 ntBASIC19.76■□□□□ 0.75
PDLIM1O00151 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
PDLIM1O00151 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
PDLIM1O00151 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC19.76■□□□□ 0.75
PDLIM1O00151 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
PDLIM1O00151 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
PDLIM1O00151 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
PDLIM1O00151 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
PDLIM1O00151 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC19.75■□□□□ 0.75
PDLIM1O00151 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
PDLIM1O00151 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC19.75■□□□□ 0.75
PDLIM1O00151 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC19.75■□□□□ 0.75
PDLIM1O00151 AC079089.2-201ENST00000531211 1277 ntBASIC19.75■□□□□ 0.75
PDLIM1O00151 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
PDLIM1O00151 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC19.75■□□□□ 0.75
PDLIM1O00151 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
PDLIM1O00151 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
PDLIM1O00151 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC19.75■□□□□ 0.75
PDLIM1O00151 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
PDLIM1O00151 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
PDLIM1O00151 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
PDLIM1O00151 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC19.74■□□□□ 0.75
PDLIM1O00151 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC19.74■□□□□ 0.75
PDLIM1O00151 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
PDLIM1O00151 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
PDLIM1O00151 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
PDLIM1O00151 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC19.74■□□□□ 0.75
PDLIM1O00151 AC099791.2-201ENST00000605725 427 ntBASIC19.74■□□□□ 0.75
PDLIM1O00151 AC092171.4-201ENST00000609130 632 ntBASIC19.74■□□□□ 0.75
PDLIM1O00151 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
PDLIM1O00151 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PDLIM1O00151 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
PDLIM1O00151 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PDLIM1O00151 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
PDLIM1O00151 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PDLIM1O00151 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PDLIM1O00151 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PDLIM1O00151 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
PDLIM1O00151 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PDLIM1O00151 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
PDLIM1O00151 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
PDLIM1O00151 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
PDLIM1O00151 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
PDLIM1O00151 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PDLIM1O00151 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PDLIM1O00151 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC19.73■□□□□ 0.75
PDLIM1O00151 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC19.73■□□□□ 0.75
PDLIM1O00151 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
PDLIM1O00151 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PDLIM1O00151 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
PDLIM1O00151 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
PDLIM1O00151 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC19.73■□□□□ 0.75
PDLIM1O00151 DUX4L19-201ENST00000557448 1267 ntBASIC19.73■□□□□ 0.75
PDLIM1O00151 AC110285.6-201ENST00000617652 491 ntBASIC19.73■□□□□ 0.75
PDLIM1O00151 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC19.73■□□□□ 0.75
PDLIM1O00151 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
PDLIM1O00151 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC19.73■□□□□ 0.75
PDLIM1O00151 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
PDLIM1O00151 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
PDLIM1O00151 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
PDLIM1O00151 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
PDLIM1O00151 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC19.73■□□□□ 0.75
PDLIM1O00151 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
PDLIM1O00151 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PDLIM1O00151 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
PDLIM1O00151 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PDLIM1O00151 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
PDLIM1O00151 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
PDLIM1O00151 AC096631.2-201ENST00000436136 790 ntBASIC19.72■□□□□ 0.75
PDLIM1O00151 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PDLIM1O00151 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
PDLIM1O00151 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC19.72■□□□□ 0.75
PDLIM1O00151 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC19.72■□□□□ 0.75
PDLIM1O00151 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
PDLIM1O00151 AL139246.5-201ENST00000606645 996 ntBASIC19.72■□□□□ 0.75
PDLIM1O00151 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
PDLIM1O00151 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
PDLIM1O00151 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PDLIM1O00151 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PDLIM1O00151 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
PDLIM1O00151 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
PDLIM1O00151 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PDLIM1O00151 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
PDLIM1O00151 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC19.71■□□□□ 0.75
PDLIM1O00151 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PDLIM1O00151 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
PDLIM1O00151 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC19.71■□□□□ 0.75
PDLIM1O00151 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC19.71■□□□□ 0.75
PDLIM1O00151 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PDLIM1O00151 NALT1-201ENST00000429224 738 ntTSL 5 BASIC19.71■□□□□ 0.75
PDLIM1O00151 SF1-220ENST00000626028 704 ntTSL 2 BASIC19.71■□□□□ 0.75
PDLIM1O00151 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 87.1 ms