Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CPSF4LA6NMK7 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CPSF4LA6NMK7 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CPSF4LA6NMK7 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC19.21■□□□□ 0.67
CPSF4LA6NMK7 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
CPSF4LA6NMK7 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC19.21■□□□□ 0.67
CPSF4LA6NMK7 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CPSF4LA6NMK7 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CPSF4LA6NMK7 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CPSF4LA6NMK7 RARG-204ENST00000543726 1779 ntTSL 2 BASIC19.21■□□□□ 0.67
CPSF4LA6NMK7 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CPSF4LA6NMK7 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC19.21■□□□□ 0.67
CPSF4LA6NMK7 LINC01006-201ENST00000333319 2292 ntBASIC19.21■□□□□ 0.67
CPSF4LA6NMK7 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC19.21■□□□□ 0.67
CPSF4LA6NMK7 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC19.21■□□□□ 0.67
CPSF4LA6NMK7 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CPSF4LA6NMK7 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CPSF4LA6NMK7 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CPSF4LA6NMK7 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CPSF4LA6NMK7 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CPSF4LA6NMK7 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
CPSF4LA6NMK7 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC19.2■□□□□ 0.66
CPSF4LA6NMK7 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC19.2■□□□□ 0.66
CPSF4LA6NMK7 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC19.2■□□□□ 0.66
CPSF4LA6NMK7 AC091305.1-201ENST00000479476 895 ntBASIC19.2■□□□□ 0.66
CPSF4LA6NMK7 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC19.2■□□□□ 0.66
CPSF4LA6NMK7 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC19.2■□□□□ 0.66
CPSF4LA6NMK7 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CPSF4LA6NMK7 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CPSF4LA6NMK7 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC19.2■□□□□ 0.66
CPSF4LA6NMK7 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
CPSF4LA6NMK7 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC19.2■□□□□ 0.66
CPSF4LA6NMK7 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
CPSF4LA6NMK7 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CPSF4LA6NMK7 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CPSF4LA6NMK7 LINC01521-201ENST00000504184 1943 ntBASIC19.19■□□□□ 0.66
CPSF4LA6NMK7 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CPSF4LA6NMK7 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CPSF4LA6NMK7 PLK5-205ENST00000642079 1969 ntBASIC19.19■□□□□ 0.66
CPSF4LA6NMK7 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CPSF4LA6NMK7 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CPSF4LA6NMK7 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CPSF4LA6NMK7 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC19.19■□□□□ 0.66
CPSF4LA6NMK7 AL031432.3-201ENST00000607698 485 ntBASIC19.19■□□□□ 0.66
CPSF4LA6NMK7 AL136967.2-201ENST00000623968 743 ntBASIC19.19■□□□□ 0.66
CPSF4LA6NMK7 AC006128.1-201ENST00000624704 1661 ntBASIC19.19■□□□□ 0.66
CPSF4LA6NMK7 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
CPSF4LA6NMK7 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CPSF4LA6NMK7 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CPSF4LA6NMK7 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC19.19■□□□□ 0.66
CPSF4LA6NMK7 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CPSF4LA6NMK7 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CPSF4LA6NMK7 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CPSF4LA6NMK7 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC19.19■□□□□ 0.66
CPSF4LA6NMK7 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CPSF4LA6NMK7 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CPSF4LA6NMK7 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CPSF4LA6NMK7 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CPSF4LA6NMK7 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC19.18■□□□□ 0.66
CPSF4LA6NMK7 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CPSF4LA6NMK7 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CPSF4LA6NMK7 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
CPSF4LA6NMK7 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC19.18■□□□□ 0.66
CPSF4LA6NMK7 EBPL-204ENST00000378272 766 ntTSL 3 BASIC19.18■□□□□ 0.66
CPSF4LA6NMK7 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC19.18■□□□□ 0.66
CPSF4LA6NMK7 FEM1AP1-201ENST00000431297 1995 ntBASIC19.18■□□□□ 0.66
CPSF4LA6NMK7 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
CPSF4LA6NMK7 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CPSF4LA6NMK7 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC19.18■□□□□ 0.66
CPSF4LA6NMK7 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CPSF4LA6NMK7 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CPSF4LA6NMK7 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CPSF4LA6NMK7 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CPSF4LA6NMK7 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CPSF4LA6NMK7 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CPSF4LA6NMK7 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CPSF4LA6NMK7 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CPSF4LA6NMK7 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CPSF4LA6NMK7 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CPSF4LA6NMK7 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC19.17■□□□□ 0.66
CPSF4LA6NMK7 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC19.17■□□□□ 0.66
CPSF4LA6NMK7 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CPSF4LA6NMK7 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CPSF4LA6NMK7 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC19.17■□□□□ 0.66
CPSF4LA6NMK7 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CPSF4LA6NMK7 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC19.17■□□□□ 0.66
CPSF4LA6NMK7 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
CPSF4LA6NMK7 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
CPSF4LA6NMK7 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC19.17■□□□□ 0.66
CPSF4LA6NMK7 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CPSF4LA6NMK7 ME2-216ENST00000639850 2331 ntTSL 5 BASIC19.17■□□□□ 0.66
CPSF4LA6NMK7 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CPSF4LA6NMK7 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC19.16■□□□□ 0.66
CPSF4LA6NMK7 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CPSF4LA6NMK7 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CPSF4LA6NMK7 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC19.16■□□□□ 0.66
CPSF4LA6NMK7 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC19.16■□□□□ 0.66
CPSF4LA6NMK7 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CPSF4LA6NMK7 MPST-204ENST00000404393 1329 ntTSL 5 BASIC19.16■□□□□ 0.66
CPSF4LA6NMK7 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms