Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC20.91■□□□□ 0.94
VPS13AQ96RL7 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VPS13AQ96RL7 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
VPS13AQ96RL7 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC20.91■□□□□ 0.94
VPS13AQ96RL7 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VPS13AQ96RL7 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC20.9■□□□□ 0.94
VPS13AQ96RL7 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC20.9■□□□□ 0.94
VPS13AQ96RL7 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
VPS13AQ96RL7 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
VPS13AQ96RL7 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
VPS13AQ96RL7 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
VPS13AQ96RL7 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
VPS13AQ96RL7 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
VPS13AQ96RL7 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
VPS13AQ96RL7 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
VPS13AQ96RL7 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC20.9■□□□□ 0.94
VPS13AQ96RL7 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
VPS13AQ96RL7 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.94
VPS13AQ96RL7 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
VPS13AQ96RL7 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC20.89■□□□□ 0.93
VPS13AQ96RL7 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
VPS13AQ96RL7 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
VPS13AQ96RL7 AP003071.4-201ENST00000562276 1284 ntBASIC20.89■□□□□ 0.93
VPS13AQ96RL7 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
VPS13AQ96RL7 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC20.89■□□□□ 0.93
VPS13AQ96RL7 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC20.89■□□□□ 0.93
VPS13AQ96RL7 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC20.89■□□□□ 0.93
VPS13AQ96RL7 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC20.89■□□□□ 0.93
VPS13AQ96RL7 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
VPS13AQ96RL7 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC20.89■□□□□ 0.93
VPS13AQ96RL7 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
VPS13AQ96RL7 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
VPS13AQ96RL7 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
VPS13AQ96RL7 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
VPS13AQ96RL7 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC20.88■□□□□ 0.93
VPS13AQ96RL7 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC20.88■□□□□ 0.93
VPS13AQ96RL7 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
VPS13AQ96RL7 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
VPS13AQ96RL7 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC20.88■□□□□ 0.93
VPS13AQ96RL7 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC20.88■□□□□ 0.93
VPS13AQ96RL7 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
VPS13AQ96RL7 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
VPS13AQ96RL7 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
VPS13AQ96RL7 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
VPS13AQ96RL7 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC20.88■□□□□ 0.93
VPS13AQ96RL7 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
VPS13AQ96RL7 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC20.88■□□□□ 0.93
VPS13AQ96RL7 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC20.88■□□□□ 0.93
VPS13AQ96RL7 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
VPS13AQ96RL7 AL135905.2-201ENST00000584934 1404 ntBASIC20.88■□□□□ 0.93
VPS13AQ96RL7 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC20.87■□□□□ 0.93
VPS13AQ96RL7 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
VPS13AQ96RL7 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
VPS13AQ96RL7 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
VPS13AQ96RL7 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC20.87■□□□□ 0.93
VPS13AQ96RL7 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
VPS13AQ96RL7 AC053503.5-201ENST00000601508 636 ntBASIC20.87■□□□□ 0.93
VPS13AQ96RL7 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC20.87■□□□□ 0.93
VPS13AQ96RL7 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC20.87■□□□□ 0.93
VPS13AQ96RL7 LY6E-205ENST00000519611 635 ntTSL 3 BASIC20.87■□□□□ 0.93
VPS13AQ96RL7 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC20.87■□□□□ 0.93
VPS13AQ96RL7 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
VPS13AQ96RL7 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC20.87■□□□□ 0.93
VPS13AQ96RL7 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC20.87■□□□□ 0.93
VPS13AQ96RL7 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
VPS13AQ96RL7 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
VPS13AQ96RL7 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
VPS13AQ96RL7 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC20.87■□□□□ 0.93
VPS13AQ96RL7 CFL2-205ENST00000555765 632 ntTSL 2 BASIC20.87■□□□□ 0.93
VPS13AQ96RL7 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
VPS13AQ96RL7 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
VPS13AQ96RL7 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC20.86■□□□□ 0.93
VPS13AQ96RL7 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
VPS13AQ96RL7 AL023875.1-201ENST00000640777 796 ntBASIC20.86■□□□□ 0.93
VPS13AQ96RL7 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
VPS13AQ96RL7 CRAT-202ENST00000393384 973 ntTSL 2 BASIC20.86■□□□□ 0.93
VPS13AQ96RL7 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
VPS13AQ96RL7 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
VPS13AQ96RL7 AC100791.3-201ENST00000617619 330 ntBASIC20.86■□□□□ 0.93
VPS13AQ96RL7 OR7E47P-201ENST00000546390 1422 ntBASIC20.86■□□□□ 0.93
VPS13AQ96RL7 AC061975.6-201ENST00000579045 1553 ntBASIC20.86■□□□□ 0.93
VPS13AQ96RL7 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
VPS13AQ96RL7 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
VPS13AQ96RL7 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
VPS13AQ96RL7 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC20.85■□□□□ 0.93
VPS13AQ96RL7 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VPS13AQ96RL7 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
VPS13AQ96RL7 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VPS13AQ96RL7 CD44-222ENST00000526025 1052 ntTSL 2 BASIC20.85■□□□□ 0.93
VPS13AQ96RL7 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC20.85■□□□□ 0.93
VPS13AQ96RL7 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
VPS13AQ96RL7 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC20.85■□□□□ 0.93
VPS13AQ96RL7 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
VPS13AQ96RL7 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC20.85■□□□□ 0.93
VPS13AQ96RL7 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
VPS13AQ96RL7 MIR6786-201ENST00000616843 113 ntBASIC20.85■□□□□ 0.93
VPS13AQ96RL7 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
VPS13AQ96RL7 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC20.85■□□□□ 0.93
VPS13AQ96RL7 AP001412.1-201ENST00000608405 714 ntBASIC20.85■□□□□ 0.93
VPS13AQ96RL7 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms