Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC28AQ8IWP9 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC17.41■□□□□ 0.38
CCDC28AQ8IWP9 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC28AQ8IWP9 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC28AQ8IWP9 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
CCDC28AQ8IWP9 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC28AQ8IWP9 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC17.41■□□□□ 0.38
CCDC28AQ8IWP9 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC28AQ8IWP9 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC17.41■□□□□ 0.38
CCDC28AQ8IWP9 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC17.41■□□□□ 0.38
CCDC28AQ8IWP9 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC28AQ8IWP9 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC28AQ8IWP9 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC17.41■□□□□ 0.38
CCDC28AQ8IWP9 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC17.4■□□□□ 0.38
CCDC28AQ8IWP9 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC28AQ8IWP9 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC28AQ8IWP9 GOLGA2P6-201ENST00000340929 2049 ntBASIC17.4■□□□□ 0.38
CCDC28AQ8IWP9 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC28AQ8IWP9 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC28AQ8IWP9 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC28AQ8IWP9 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC28AQ8IWP9 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC17.4■□□□□ 0.38
CCDC28AQ8IWP9 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
CCDC28AQ8IWP9 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC28AQ8IWP9 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC28AQ8IWP9 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC28AQ8IWP9 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
CCDC28AQ8IWP9 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC17.4■□□□□ 0.38
CCDC28AQ8IWP9 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC17.4■□□□□ 0.38
CCDC28AQ8IWP9 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC17.4■□□□□ 0.38
CCDC28AQ8IWP9 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
CCDC28AQ8IWP9 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC28AQ8IWP9 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
CCDC28AQ8IWP9 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC28AQ8IWP9 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC17.4■□□□□ 0.38
CCDC28AQ8IWP9 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC17.4■□□□□ 0.38
CCDC28AQ8IWP9 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC28AQ8IWP9 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
CCDC28AQ8IWP9 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
CCDC28AQ8IWP9 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
CCDC28AQ8IWP9 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC17.39■□□□□ 0.38
CCDC28AQ8IWP9 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
CCDC28AQ8IWP9 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC17.39■□□□□ 0.37
CCDC28AQ8IWP9 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC28AQ8IWP9 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC17.39■□□□□ 0.37
CCDC28AQ8IWP9 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC28AQ8IWP9 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC28AQ8IWP9 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC28AQ8IWP9 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC17.39■□□□□ 0.37
CCDC28AQ8IWP9 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC28AQ8IWP9 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC28AQ8IWP9 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
CCDC28AQ8IWP9 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC28AQ8IWP9 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
CCDC28AQ8IWP9 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC28AQ8IWP9 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC28AQ8IWP9 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
CCDC28AQ8IWP9 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC28AQ8IWP9 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC28AQ8IWP9 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
CCDC28AQ8IWP9 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
CCDC28AQ8IWP9 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC28AQ8IWP9 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC17.38■□□□□ 0.37
CCDC28AQ8IWP9 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC28AQ8IWP9 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC28AQ8IWP9 AL133373.2-201ENST00000623187 2828 ntBASIC17.38■□□□□ 0.37
CCDC28AQ8IWP9 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
CCDC28AQ8IWP9 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC28AQ8IWP9 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC28AQ8IWP9 HES4-204ENST00000484667 667 ntTSL 3 BASIC17.38■□□□□ 0.37
CCDC28AQ8IWP9 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
CCDC28AQ8IWP9 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC28AQ8IWP9 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC28AQ8IWP9 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC17.38■□□□□ 0.37
CCDC28AQ8IWP9 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC28AQ8IWP9 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC28AQ8IWP9 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC28AQ8IWP9 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
CCDC28AQ8IWP9 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC28AQ8IWP9 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC28AQ8IWP9 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
CCDC28AQ8IWP9 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC28AQ8IWP9 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
CCDC28AQ8IWP9 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC28AQ8IWP9 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC28AQ8IWP9 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC28AQ8IWP9 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
CCDC28AQ8IWP9 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC17.37■□□□□ 0.37
CCDC28AQ8IWP9 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC28AQ8IWP9 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC28AQ8IWP9 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC28AQ8IWP9 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC28AQ8IWP9 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC28AQ8IWP9 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC28AQ8IWP9 AL049812.1-201ENST00000432563 2267 ntBASIC17.37■□□□□ 0.37
CCDC28AQ8IWP9 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC17.37■□□□□ 0.37
CCDC28AQ8IWP9 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC17.37■□□□□ 0.37
CCDC28AQ8IWP9 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC17.37■□□□□ 0.37
CCDC28AQ8IWP9 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC28AQ8IWP9 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms