Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC19.4■□□□□ 0.7
RFX4Q33E94 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
RFX4Q33E94 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RFX4Q33E94 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC19.4■□□□□ 0.7
RFX4Q33E94 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC19.4■□□□□ 0.7
RFX4Q33E94 SRD5A1P1-201ENST00000442297 786 ntBASIC19.4■□□□□ 0.7
RFX4Q33E94 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
RFX4Q33E94 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC19.4■□□□□ 0.7
RFX4Q33E94 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC19.4■□□□□ 0.7
RFX4Q33E94 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RFX4Q33E94 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC19.4■□□□□ 0.7
RFX4Q33E94 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
RFX4Q33E94 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
RFX4Q33E94 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC19.39■□□□□ 0.7
RFX4Q33E94 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
RFX4Q33E94 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.7
RFX4Q33E94 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
RFX4Q33E94 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.7
RFX4Q33E94 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
RFX4Q33E94 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RFX4Q33E94 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RFX4Q33E94 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC19.39■□□□□ 0.69
RFX4Q33E94 GRAMD4P7-201ENST00000578182 1232 ntBASIC19.39■□□□□ 0.69
RFX4Q33E94 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC19.39■□□□□ 0.69
RFX4Q33E94 AC087239.1-201ENST00000622671 572 ntBASIC19.39■□□□□ 0.69
RFX4Q33E94 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC19.39■□□□□ 0.69
RFX4Q33E94 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RFX4Q33E94 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
RFX4Q33E94 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
RFX4Q33E94 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RFX4Q33E94 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
RFX4Q33E94 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC19.39■□□□□ 0.69
RFX4Q33E94 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC19.39■□□□□ 0.69
RFX4Q33E94 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC19.39■□□□□ 0.69
RFX4Q33E94 ERF-202ENST00000440177 2032 ntTSL 2 BASIC19.39■□□□□ 0.69
RFX4Q33E94 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC19.39■□□□□ 0.69
RFX4Q33E94 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RFX4Q33E94 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
RFX4Q33E94 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
RFX4Q33E94 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC19.39■□□□□ 0.69
RFX4Q33E94 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC19.39■□□□□ 0.69
RFX4Q33E94 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RFX4Q33E94 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RFX4Q33E94 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RFX4Q33E94 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC19.38■□□□□ 0.69
RFX4Q33E94 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC19.38■□□□□ 0.69
RFX4Q33E94 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
RFX4Q33E94 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
RFX4Q33E94 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
RFX4Q33E94 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC19.38■□□□□ 0.69
RFX4Q33E94 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
RFX4Q33E94 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC19.38■□□□□ 0.69
RFX4Q33E94 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
RFX4Q33E94 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
RFX4Q33E94 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
RFX4Q33E94 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
RFX4Q33E94 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC19.37■□□□□ 0.69
RFX4Q33E94 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
RFX4Q33E94 AC010141.3-201ENST00000456659 717 ntBASIC19.37■□□□□ 0.69
RFX4Q33E94 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC19.37■□□□□ 0.69
RFX4Q33E94 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC19.37■□□□□ 0.69
RFX4Q33E94 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC19.37■□□□□ 0.69
RFX4Q33E94 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
RFX4Q33E94 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
RFX4Q33E94 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
RFX4Q33E94 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
RFX4Q33E94 RNF165-205ENST00000588679 2904 ntBASIC19.36■□□□□ 0.69
RFX4Q33E94 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC19.36■□□□□ 0.69
RFX4Q33E94 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
RFX4Q33E94 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC19.36■□□□□ 0.69
RFX4Q33E94 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
RFX4Q33E94 QDPR-206ENST00000508623 601 ntTSL 3 BASIC19.36■□□□□ 0.69
RFX4Q33E94 AL512631.2-201ENST00000604634 923 ntBASIC19.36■□□□□ 0.69
RFX4Q33E94 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC19.36■□□□□ 0.69
RFX4Q33E94 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
RFX4Q33E94 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
RFX4Q33E94 AC003102.1-202ENST00000563394 1796 ntBASIC19.36■□□□□ 0.69
RFX4Q33E94 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
RFX4Q33E94 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
RFX4Q33E94 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC19.36■□□□□ 0.69
RFX4Q33E94 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
RFX4Q33E94 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
RFX4Q33E94 PLK5-205ENST00000642079 1969 ntBASIC19.35■□□□□ 0.69
RFX4Q33E94 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC19.35■□□□□ 0.69
RFX4Q33E94 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC19.35■□□□□ 0.69
RFX4Q33E94 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
RFX4Q33E94 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
RFX4Q33E94 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
RFX4Q33E94 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC19.35■□□□□ 0.69
RFX4Q33E94 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC19.35■□□□□ 0.69
RFX4Q33E94 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC19.35■□□□□ 0.69
RFX4Q33E94 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC19.35■□□□□ 0.69
RFX4Q33E94 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC19.35■□□□□ 0.69
RFX4Q33E94 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
RFX4Q33E94 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
RFX4Q33E94 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
RFX4Q33E94 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
RFX4Q33E94 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
RFX4Q33E94 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
RFX4Q33E94 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms