Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PDLIM4P50479 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC17.73■□□□□ 0.43
PDLIM4P50479 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PDLIM4P50479 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
PDLIM4P50479 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
PDLIM4P50479 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC17.73■□□□□ 0.43
PDLIM4P50479 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC17.73■□□□□ 0.43
PDLIM4P50479 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC17.73■□□□□ 0.43
PDLIM4P50479 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PDLIM4P50479 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PDLIM4P50479 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC17.73■□□□□ 0.43
PDLIM4P50479 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
PDLIM4P50479 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
PDLIM4P50479 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PDLIM4P50479 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PDLIM4P50479 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PDLIM4P50479 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
PDLIM4P50479 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC17.72■□□□□ 0.43
PDLIM4P50479 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PDLIM4P50479 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PDLIM4P50479 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PDLIM4P50479 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
PDLIM4P50479 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
PDLIM4P50479 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC17.72■□□□□ 0.43
PDLIM4P50479 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
PDLIM4P50479 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
PDLIM4P50479 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PDLIM4P50479 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC17.72■□□□□ 0.43
PDLIM4P50479 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PDLIM4P50479 TSPY20P-201ENST00000450910 630 ntBASIC17.72■□□□□ 0.43
PDLIM4P50479 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC17.72■□□□□ 0.43
PDLIM4P50479 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC17.72■□□□□ 0.43
PDLIM4P50479 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
PDLIM4P50479 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC17.72■□□□□ 0.43
PDLIM4P50479 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC17.72■□□□□ 0.43
PDLIM4P50479 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PDLIM4P50479 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PDLIM4P50479 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
PDLIM4P50479 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
PDLIM4P50479 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC17.72■□□□□ 0.43
PDLIM4P50479 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC17.72■□□□□ 0.43
PDLIM4P50479 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
PDLIM4P50479 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PDLIM4P50479 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
PDLIM4P50479 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC17.71■□□□□ 0.43
PDLIM4P50479 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PDLIM4P50479 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PDLIM4P50479 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PDLIM4P50479 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC17.71■□□□□ 0.43
PDLIM4P50479 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
PDLIM4P50479 PHB2-213ENST00000546111 858 ntTSL 2 BASIC17.71■□□□□ 0.43
PDLIM4P50479 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC17.71■□□□□ 0.43
PDLIM4P50479 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
PDLIM4P50479 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
PDLIM4P50479 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
PDLIM4P50479 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PDLIM4P50479 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC17.71■□□□□ 0.43
PDLIM4P50479 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC17.71■□□□□ 0.42
PDLIM4P50479 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PDLIM4P50479 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PDLIM4P50479 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
PDLIM4P50479 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PDLIM4P50479 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PDLIM4P50479 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
PDLIM4P50479 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC17.7■□□□□ 0.42
PDLIM4P50479 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
PDLIM4P50479 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
PDLIM4P50479 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PDLIM4P50479 MIPEPP3-201ENST00000412105 444 ntBASIC17.7■□□□□ 0.42
PDLIM4P50479 AL512625.2-201ENST00000417533 625 ntBASIC17.7■□□□□ 0.42
PDLIM4P50479 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC17.7■□□□□ 0.42
PDLIM4P50479 RARG-204ENST00000543726 1779 ntTSL 2 BASIC17.7■□□□□ 0.42
PDLIM4P50479 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC17.7■□□□□ 0.42
PDLIM4P50479 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC17.69■□□□□ 0.42
PDLIM4P50479 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
PDLIM4P50479 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PDLIM4P50479 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
PDLIM4P50479 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PDLIM4P50479 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PDLIM4P50479 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PDLIM4P50479 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC17.69■□□□□ 0.42
PDLIM4P50479 FAM201B-201ENST00000458407 597 ntBASIC17.69■□□□□ 0.42
PDLIM4P50479 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PDLIM4P50479 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
PDLIM4P50479 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC17.69■□□□□ 0.42
PDLIM4P50479 AC016405.3-201ENST00000607710 860 ntBASIC17.69■□□□□ 0.42
PDLIM4P50479 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC17.69■□□□□ 0.42
PDLIM4P50479 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PDLIM4P50479 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PDLIM4P50479 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
PDLIM4P50479 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC17.69■□□□□ 0.42
PDLIM4P50479 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
PDLIM4P50479 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PDLIM4P50479 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
PDLIM4P50479 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC17.68■□□□□ 0.42
PDLIM4P50479 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC17.68■□□□□ 0.42
PDLIM4P50479 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
PDLIM4P50479 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC17.68■□□□□ 0.42
PDLIM4P50479 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PDLIM4P50479 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms