Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
CX3CR1P49238 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CX3CR1P49238 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CX3CR1P49238 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
CX3CR1P49238 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC18.33■□□□□ 0.52
CX3CR1P49238 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC18.33■□□□□ 0.52
CX3CR1P49238 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
CX3CR1P49238 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
CX3CR1P49238 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CX3CR1P49238 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CX3CR1P49238 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
CX3CR1P49238 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC18.32■□□□□ 0.52
CX3CR1P49238 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
CX3CR1P49238 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC18.32■□□□□ 0.52
CX3CR1P49238 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
CX3CR1P49238 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
CX3CR1P49238 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC18.32■□□□□ 0.52
CX3CR1P49238 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CX3CR1P49238 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CX3CR1P49238 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CX3CR1P49238 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CX3CR1P49238 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC18.32■□□□□ 0.52
CX3CR1P49238 AL354811.1-201ENST00000610286 706 ntBASIC18.32■□□□□ 0.52
CX3CR1P49238 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC18.32■□□□□ 0.52
CX3CR1P49238 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CX3CR1P49238 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC18.32■□□□□ 0.52
CX3CR1P49238 RARG-204ENST00000543726 1779 ntTSL 2 BASIC18.32■□□□□ 0.52
CX3CR1P49238 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
CX3CR1P49238 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CX3CR1P49238 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CX3CR1P49238 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CX3CR1P49238 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CX3CR1P49238 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CX3CR1P49238 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CX3CR1P49238 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC18.31■□□□□ 0.52
CX3CR1P49238 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CX3CR1P49238 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC18.31■□□□□ 0.52
CX3CR1P49238 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC18.31■□□□□ 0.52
CX3CR1P49238 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC18.31■□□□□ 0.52
CX3CR1P49238 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC18.31■□□□□ 0.52
CX3CR1P49238 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC18.31■□□□□ 0.52
CX3CR1P49238 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CX3CR1P49238 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
CX3CR1P49238 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC18.31■□□□□ 0.52
CX3CR1P49238 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CX3CR1P49238 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
CX3CR1P49238 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC18.31■□□□□ 0.52
CX3CR1P49238 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CX3CR1P49238 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
CX3CR1P49238 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CX3CR1P49238 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC18.3■□□□□ 0.52
CX3CR1P49238 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CX3CR1P49238 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC18.3■□□□□ 0.52
CX3CR1P49238 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CX3CR1P49238 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CX3CR1P49238 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
CX3CR1P49238 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC18.3■□□□□ 0.52
CX3CR1P49238 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CX3CR1P49238 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CX3CR1P49238 NT5C3AP1-201ENST00000394500 1012 ntBASIC18.3■□□□□ 0.52
CX3CR1P49238 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CX3CR1P49238 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CX3CR1P49238 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CX3CR1P49238 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CX3CR1P49238 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CX3CR1P49238 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CX3CR1P49238 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CX3CR1P49238 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC18.29■□□□□ 0.52
CX3CR1P49238 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC18.29■□□□□ 0.52
CX3CR1P49238 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CX3CR1P49238 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC18.29■□□□□ 0.52
CX3CR1P49238 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CX3CR1P49238 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC18.29■□□□□ 0.52
CX3CR1P49238 STOX2-205ENST00000513034 807 ntTSL 3 BASIC18.29■□□□□ 0.52
CX3CR1P49238 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CX3CR1P49238 RHOF-204ENST00000537265 699 ntTSL 2 BASIC18.29■□□□□ 0.52
CX3CR1P49238 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC18.29■□□□□ 0.52
CX3CR1P49238 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC18.29■□□□□ 0.52
CX3CR1P49238 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CX3CR1P49238 AL358852.1-201ENST00000623174 1268 ntBASIC18.29■□□□□ 0.52
CX3CR1P49238 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CX3CR1P49238 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CX3CR1P49238 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CX3CR1P49238 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CX3CR1P49238 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CX3CR1P49238 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CX3CR1P49238 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
CX3CR1P49238 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CX3CR1P49238 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CX3CR1P49238 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CX3CR1P49238 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CX3CR1P49238 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CX3CR1P49238 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CX3CR1P49238 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC18.28■□□□□ 0.52
CX3CR1P49238 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CX3CR1P49238 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC18.28■□□□□ 0.52
CX3CR1P49238 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC18.28■□□□□ 0.52
CX3CR1P49238 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CX3CR1P49238 HYI-206ENST00000372434 1025 ntTSL 5 BASIC18.28■□□□□ 0.52
CX3CR1P49238 NME4-202ENST00000382940 766 ntTSL 3 BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 56.3 ms