Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 APTR-205ENST00000447009 902 ntTSL 2 BASIC20.51■□□□□ 0.87
HOXC4P09017 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC20.51■□□□□ 0.87
HOXC4P09017 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC20.51■□□□□ 0.87
HOXC4P09017 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC20.51■□□□□ 0.87
HOXC4P09017 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
HOXC4P09017 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
HOXC4P09017 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
HOXC4P09017 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC20.51■□□□□ 0.87
HOXC4P09017 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
HOXC4P09017 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HOXC4P09017 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC20.5■□□□□ 0.87
HOXC4P09017 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC20.5■□□□□ 0.87
HOXC4P09017 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC20.5■□□□□ 0.87
HOXC4P09017 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HOXC4P09017 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HOXC4P09017 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HOXC4P09017 ME2-206ENST00000638410 2289 ntTSL 5 BASIC20.5■□□□□ 0.87
HOXC4P09017 ME2-210ENST00000639255 2262 ntTSL 5 BASIC20.5■□□□□ 0.87
HOXC4P09017 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HOXC4P09017 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
HOXC4P09017 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC20.5■□□□□ 0.87
HOXC4P09017 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HOXC4P09017 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
HOXC4P09017 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
HOXC4P09017 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HOXC4P09017 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC20.49■□□□□ 0.87
HOXC4P09017 PTPA-214ENST00000423100 988 ntTSL 2 BASIC20.49■□□□□ 0.87
HOXC4P09017 PPP1R14BP2-201ENST00000426284 444 ntBASIC20.49■□□□□ 0.87
HOXC4P09017 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC20.49■□□□□ 0.87
HOXC4P09017 PHB2-213ENST00000546111 858 ntTSL 2 BASIC20.49■□□□□ 0.87
HOXC4P09017 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
HOXC4P09017 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
HOXC4P09017 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HOXC4P09017 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC20.49■□□□□ 0.87
HOXC4P09017 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC20.49■□□□□ 0.87
HOXC4P09017 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
HOXC4P09017 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
HOXC4P09017 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HOXC4P09017 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HOXC4P09017 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC20.48■□□□□ 0.87
HOXC4P09017 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
HOXC4P09017 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HOXC4P09017 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
HOXC4P09017 AC007322.3-201ENST00000426526 701 ntBASIC20.48■□□□□ 0.87
HOXC4P09017 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC20.48■□□□□ 0.87
HOXC4P09017 ISCU-212ENST00000547005 795 ntTSL 3 BASIC20.48■□□□□ 0.87
HOXC4P09017 KLF13-207ENST00000560473 489 ntTSL 3 BASIC20.48■□□□□ 0.87
HOXC4P09017 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC20.48■□□□□ 0.87
HOXC4P09017 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HOXC4P09017 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC20.48■□□□□ 0.87
HOXC4P09017 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HOXC4P09017 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC20.48■□□□□ 0.87
HOXC4P09017 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
HOXC4P09017 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
HOXC4P09017 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
HOXC4P09017 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
HOXC4P09017 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
HOXC4P09017 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC20.47■□□□□ 0.87
HOXC4P09017 BX276092.2-201ENST00000417668 665 ntBASIC20.47■□□□□ 0.87
HOXC4P09017 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC20.47■□□□□ 0.87
HOXC4P09017 KRT18P6-201ENST00000555540 1265 ntBASIC20.47■□□□□ 0.87
HOXC4P09017 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
HOXC4P09017 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
HOXC4P09017 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC20.47■□□□□ 0.87
HOXC4P09017 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
HOXC4P09017 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.47■□□□□ 0.87
HOXC4P09017 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
HOXC4P09017 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
HOXC4P09017 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC20.46■□□□□ 0.87
HOXC4P09017 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
HOXC4P09017 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
HOXC4P09017 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC20.46■□□□□ 0.87
HOXC4P09017 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
HOXC4P09017 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC20.46■□□□□ 0.87
HOXC4P09017 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC20.46■□□□□ 0.87
HOXC4P09017 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC20.46■□□□□ 0.87
HOXC4P09017 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
HOXC4P09017 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC20.46■□□□□ 0.87
HOXC4P09017 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
HOXC4P09017 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
HOXC4P09017 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
HOXC4P09017 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
HOXC4P09017 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
HOXC4P09017 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
HOXC4P09017 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
HOXC4P09017 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
HOXC4P09017 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
HOXC4P09017 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC20.45■□□□□ 0.86
HOXC4P09017 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC20.45■□□□□ 0.86
HOXC4P09017 VMO1-204ENST00000441199 741 ntTSL 2 BASIC20.45■□□□□ 0.86
HOXC4P09017 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC20.45■□□□□ 0.86
HOXC4P09017 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC20.45■□□□□ 0.86
HOXC4P09017 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
HOXC4P09017 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
HOXC4P09017 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
HOXC4P09017 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
HOXC4P09017 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC20.45■□□□□ 0.86
HOXC4P09017 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
HOXC4P09017 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC20.44■□□□□ 0.86
HOXC4P09017 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms