Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC20.49■□□□□ 0.87
SDC3O75056 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
SDC3O75056 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
SDC3O75056 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC20.49■□□□□ 0.87
SDC3O75056 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SDC3O75056 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SDC3O75056 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SDC3O75056 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC20.49■□□□□ 0.87
SDC3O75056 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SDC3O75056 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC20.48■□□□□ 0.87
SDC3O75056 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
SDC3O75056 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC20.48■□□□□ 0.87
SDC3O75056 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SDC3O75056 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SDC3O75056 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SDC3O75056 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC20.48■□□□□ 0.87
SDC3O75056 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC20.48■□□□□ 0.87
SDC3O75056 CD44-222ENST00000526025 1052 ntTSL 2 BASIC20.48■□□□□ 0.87
SDC3O75056 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC20.48■□□□□ 0.87
SDC3O75056 INO80E-214ENST00000620599 515 ntTSL 2 BASIC20.48■□□□□ 0.87
SDC3O75056 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SDC3O75056 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SDC3O75056 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SDC3O75056 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SDC3O75056 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
SDC3O75056 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC20.47■□□□□ 0.87
SDC3O75056 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
SDC3O75056 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC20.47■□□□□ 0.87
SDC3O75056 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SDC3O75056 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SDC3O75056 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SDC3O75056 GAS7-202ENST00000396115 929 ntTSL 5 BASIC20.47■□□□□ 0.87
SDC3O75056 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC20.47■□□□□ 0.87
SDC3O75056 AC098590.1-201ENST00000468126 897 ntBASIC20.47■□□□□ 0.87
SDC3O75056 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC20.47■□□□□ 0.87
SDC3O75056 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC20.47■□□□□ 0.87
SDC3O75056 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC20.47■□□□□ 0.87
SDC3O75056 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC20.47■□□□□ 0.87
SDC3O75056 ME2-208ENST00000638937 2471 ntTSL 5 BASIC20.47■□□□□ 0.87
SDC3O75056 KRT17P1-201ENST00000399211 1546 ntBASIC20.47■□□□□ 0.87
SDC3O75056 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
SDC3O75056 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SDC3O75056 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
SDC3O75056 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
SDC3O75056 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
SDC3O75056 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
SDC3O75056 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC20.46■□□□□ 0.87
SDC3O75056 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC20.46■□□□□ 0.87
SDC3O75056 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
SDC3O75056 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC20.46■□□□□ 0.87
SDC3O75056 ADM-205ENST00000528544 586 ntTSL 2 BASIC20.46■□□□□ 0.87
SDC3O75056 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC20.46■□□□□ 0.87
SDC3O75056 AC006058.3-201ENST00000606217 1069 ntBASIC20.46■□□□□ 0.87
SDC3O75056 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC20.46■□□□□ 0.87
SDC3O75056 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC20.46■□□□□ 0.87
SDC3O75056 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
SDC3O75056 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SDC3O75056 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC20.45■□□□□ 0.87
SDC3O75056 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC20.45■□□□□ 0.86
SDC3O75056 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SDC3O75056 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SDC3O75056 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SDC3O75056 AC091799.1-201ENST00000422823 811 ntBASIC20.45■□□□□ 0.86
SDC3O75056 AC245052.3-201ENST00000450182 901 ntBASIC20.45■□□□□ 0.86
SDC3O75056 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SDC3O75056 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC20.45■□□□□ 0.86
SDC3O75056 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
SDC3O75056 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
SDC3O75056 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SDC3O75056 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC20.45■□□□□ 0.86
SDC3O75056 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SDC3O75056 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SDC3O75056 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SDC3O75056 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC20.44■□□□□ 0.86
SDC3O75056 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SDC3O75056 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
SDC3O75056 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
SDC3O75056 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
SDC3O75056 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
SDC3O75056 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
SDC3O75056 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SDC3O75056 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SDC3O75056 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
SDC3O75056 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC20.44■□□□□ 0.86
SDC3O75056 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
SDC3O75056 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC20.44■□□□□ 0.86
SDC3O75056 IRX5-204ENST00000560154 879 ntTSL 5 BASIC20.44■□□□□ 0.86
SDC3O75056 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC20.44■□□□□ 0.86
SDC3O75056 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SDC3O75056 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SDC3O75056 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SDC3O75056 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC20.44■□□□□ 0.86
SDC3O75056 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SDC3O75056 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC20.43■□□□□ 0.86
SDC3O75056 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC20.43■□□□□ 0.86
SDC3O75056 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
SDC3O75056 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
SDC3O75056 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC20.43■□□□□ 0.86
SDC3O75056 CASP6-205ENST00000505486 538 ntTSL 4 BASIC20.43■□□□□ 0.86
SDC3O75056 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms