Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
HDAC3O15379 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
HDAC3O15379 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC20.33■□□□□ 0.84
HDAC3O15379 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HDAC3O15379 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HDAC3O15379 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
HDAC3O15379 AC007225.1-201ENST00000566331 1836 ntBASIC20.32■□□□□ 0.84
HDAC3O15379 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC20.32■□□□□ 0.84
HDAC3O15379 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC20.32■□□□□ 0.84
HDAC3O15379 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
HDAC3O15379 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC20.32■□□□□ 0.84
HDAC3O15379 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
HDAC3O15379 GRAMD4P7-201ENST00000578182 1232 ntBASIC20.32■□□□□ 0.84
HDAC3O15379 SMUG1P1-201ENST00000590640 811 ntBASIC20.32■□□□□ 0.84
HDAC3O15379 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC20.32■□□□□ 0.84
HDAC3O15379 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC20.32■□□□□ 0.84
HDAC3O15379 AL391422.3-201ENST00000603791 2761 ntBASIC20.32■□□□□ 0.84
HDAC3O15379 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC20.32■□□□□ 0.84
HDAC3O15379 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HDAC3O15379 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
HDAC3O15379 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
HDAC3O15379 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
HDAC3O15379 AC020907.5-201ENST00000624372 1936 ntBASIC20.31■□□□□ 0.84
HDAC3O15379 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HDAC3O15379 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
HDAC3O15379 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC20.31■□□□□ 0.84
HDAC3O15379 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
HDAC3O15379 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
HDAC3O15379 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
HDAC3O15379 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC20.31■□□□□ 0.84
HDAC3O15379 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC20.31■□□□□ 0.84
HDAC3O15379 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC20.31■□□□□ 0.84
HDAC3O15379 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HDAC3O15379 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC20.31■□□□□ 0.84
HDAC3O15379 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
HDAC3O15379 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC20.31■□□□□ 0.84
HDAC3O15379 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC20.31■□□□□ 0.84
HDAC3O15379 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HDAC3O15379 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC20.31■□□□□ 0.84
HDAC3O15379 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC20.31■□□□□ 0.84
HDAC3O15379 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
HDAC3O15379 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
HDAC3O15379 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HDAC3O15379 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
HDAC3O15379 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC20.3■□□□□ 0.84
HDAC3O15379 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC20.3■□□□□ 0.84
HDAC3O15379 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
HDAC3O15379 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
HDAC3O15379 GUSBP5-201ENST00000418136 578 ntBASIC20.3■□□□□ 0.84
HDAC3O15379 SF1-220ENST00000626028 704 ntTSL 2 BASIC20.3■□□□□ 0.84
HDAC3O15379 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HDAC3O15379 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
HDAC3O15379 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HDAC3O15379 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
HDAC3O15379 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HDAC3O15379 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC20.3■□□□□ 0.84
HDAC3O15379 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC20.3■□□□□ 0.84
HDAC3O15379 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC20.3■□□□□ 0.84
HDAC3O15379 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HDAC3O15379 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HDAC3O15379 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
HDAC3O15379 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HDAC3O15379 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC20.29■□□□□ 0.84
HDAC3O15379 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
HDAC3O15379 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC20.29■□□□□ 0.84
HDAC3O15379 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HDAC3O15379 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
HDAC3O15379 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HDAC3O15379 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC20.29■□□□□ 0.84
HDAC3O15379 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HDAC3O15379 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HDAC3O15379 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC20.29■□□□□ 0.84
HDAC3O15379 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC20.29■□□□□ 0.84
HDAC3O15379 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
HDAC3O15379 SNX3-202ENST00000349379 890 ntTSL 2 BASIC20.29■□□□□ 0.84
HDAC3O15379 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC20.29■□□□□ 0.84
HDAC3O15379 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
HDAC3O15379 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
HDAC3O15379 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC20.28■□□□□ 0.84
HDAC3O15379 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HDAC3O15379 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HDAC3O15379 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC20.28■□□□□ 0.84
HDAC3O15379 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HDAC3O15379 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HDAC3O15379 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HDAC3O15379 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HDAC3O15379 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HDAC3O15379 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC20.28■□□□□ 0.84
HDAC3O15379 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC20.28■□□□□ 0.84
HDAC3O15379 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC20.28■□□□□ 0.84
HDAC3O15379 AL035685.1-201ENST00000636663 812 ntBASIC20.28■□□□□ 0.84
HDAC3O15379 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HDAC3O15379 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
HDAC3O15379 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC20.28■□□□□ 0.84
HDAC3O15379 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HDAC3O15379 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC20.28■□□□□ 0.84
HDAC3O15379 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
HDAC3O15379 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
HDAC3O15379 ME2-218ENST00000640965 2476 ntTSL 5 BASIC20.28■□□□□ 0.84
HDAC3O15379 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms