Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC16.82■□□□□ 0.28
HMGB3O15347 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC16.82■□□□□ 0.28
HMGB3O15347 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC16.82■□□□□ 0.28
HMGB3O15347 DUX4L18-201ENST00000553347 1267 ntBASIC16.82■□□□□ 0.28
HMGB3O15347 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC16.82■□□□□ 0.28
HMGB3O15347 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC16.82■□□□□ 0.28
HMGB3O15347 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC16.82■□□□□ 0.28
HMGB3O15347 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HMGB3O15347 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HMGB3O15347 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HMGB3O15347 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HMGB3O15347 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC16.81■□□□□ 0.28
HMGB3O15347 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC16.81■□□□□ 0.28
HMGB3O15347 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC16.81■□□□□ 0.28
HMGB3O15347 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HMGB3O15347 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC16.81■□□□□ 0.28
HMGB3O15347 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HMGB3O15347 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HMGB3O15347 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC16.81■□□□□ 0.28
HMGB3O15347 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HMGB3O15347 KRT18P24-201ENST00000344739 1156 ntBASIC16.81■□□□□ 0.28
HMGB3O15347 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
HMGB3O15347 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HMGB3O15347 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
HMGB3O15347 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HMGB3O15347 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
HMGB3O15347 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC16.81■□□□□ 0.28
HMGB3O15347 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HMGB3O15347 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC16.81■□□□□ 0.28
HMGB3O15347 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC16.81■□□□□ 0.28
HMGB3O15347 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
HMGB3O15347 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
HMGB3O15347 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC16.8■□□□□ 0.28
HMGB3O15347 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC16.8■□□□□ 0.28
HMGB3O15347 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGB3O15347 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HMGB3O15347 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HMGB3O15347 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGB3O15347 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGB3O15347 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGB3O15347 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGB3O15347 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGB3O15347 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGB3O15347 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HMGB3O15347 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
HMGB3O15347 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGB3O15347 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC16.79■□□□□ 0.28
HMGB3O15347 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HMGB3O15347 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HMGB3O15347 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HMGB3O15347 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HMGB3O15347 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HMGB3O15347 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC16.79■□□□□ 0.28
HMGB3O15347 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
HMGB3O15347 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
HMGB3O15347 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC16.79■□□□□ 0.28
HMGB3O15347 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC16.79■□□□□ 0.28
HMGB3O15347 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HMGB3O15347 KRT18P60-201ENST00000312876 1297 ntBASIC16.79■□□□□ 0.28
HMGB3O15347 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HMGB3O15347 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC16.79■□□□□ 0.28
HMGB3O15347 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HMGB3O15347 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
HMGB3O15347 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HMGB3O15347 SNX5-217ENST00000606557 1087 ntBASIC16.79■□□□□ 0.28
HMGB3O15347 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC16.79■□□□□ 0.28
HMGB3O15347 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC16.79■□□□□ 0.28
HMGB3O15347 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HMGB3O15347 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC16.79■□□□□ 0.28
HMGB3O15347 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
HMGB3O15347 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
HMGB3O15347 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HMGB3O15347 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC16.79■□□□□ 0.28
HMGB3O15347 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HMGB3O15347 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGB3O15347 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGB3O15347 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC16.78■□□□□ 0.28
HMGB3O15347 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC16.78■□□□□ 0.28
HMGB3O15347 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGB3O15347 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HMGB3O15347 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGB3O15347 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
HMGB3O15347 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HMGB3O15347 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC16.78■□□□□ 0.28
HMGB3O15347 BHLHE23-202ENST00000612929 1109 ntBASIC16.78■□□□□ 0.28
HMGB3O15347 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGB3O15347 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGB3O15347 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC16.78■□□□□ 0.28
HMGB3O15347 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC16.78■□□□□ 0.28
HMGB3O15347 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGB3O15347 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HMGB3O15347 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC16.77■□□□□ 0.28
HMGB3O15347 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
HMGB3O15347 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
HMGB3O15347 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
HMGB3O15347 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HMGB3O15347 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
HMGB3O15347 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
HMGB3O15347 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
HMGB3O15347 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms