Protein–RNA interactions for Protein: A0A0B4J238

TRAV1-2, T-cell receptor alpha variable 1-2 (Fragment), humanhuman

Predictions only

Length 106 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-2A0A0B4J238 RNF165-205ENST00000588679 2904 ntBASIC18.19■□□□□ 0.5
TRAV1-2A0A0B4J238 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
TRAV1-2A0A0B4J238 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
TRAV1-2A0A0B4J238 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC18.19■□□□□ 0.5
TRAV1-2A0A0B4J238 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
TRAV1-2A0A0B4J238 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TRAV1-2A0A0B4J238 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TRAV1-2A0A0B4J238 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
TRAV1-2A0A0B4J238 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
TRAV1-2A0A0B4J238 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
TRAV1-2A0A0B4J238 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TRAV1-2A0A0B4J238 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC18.19■□□□□ 0.5
TRAV1-2A0A0B4J238 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC18.19■□□□□ 0.5
TRAV1-2A0A0B4J238 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
TRAV1-2A0A0B4J238 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
TRAV1-2A0A0B4J238 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
TRAV1-2A0A0B4J238 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC18.19■□□□□ 0.5
TRAV1-2A0A0B4J238 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
TRAV1-2A0A0B4J238 PCDHAC2-203ENST00000615316 3011 ntBASIC18.19■□□□□ 0.5
TRAV1-2A0A0B4J238 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC18.18■□□□□ 0.5
TRAV1-2A0A0B4J238 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
TRAV1-2A0A0B4J238 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC18.18■□□□□ 0.5
TRAV1-2A0A0B4J238 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
TRAV1-2A0A0B4J238 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC18.18■□□□□ 0.5
TRAV1-2A0A0B4J238 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC18.18■□□□□ 0.5
TRAV1-2A0A0B4J238 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC18.18■□□□□ 0.5
TRAV1-2A0A0B4J238 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
TRAV1-2A0A0B4J238 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRAV1-2A0A0B4J238 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC18.18■□□□□ 0.5
TRAV1-2A0A0B4J238 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRAV1-2A0A0B4J238 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC18.18■□□□□ 0.5
TRAV1-2A0A0B4J238 TSPY9P-201ENST00000440215 945 ntBASIC18.18■□□□□ 0.5
TRAV1-2A0A0B4J238 TSPY11P-201ENST00000442607 1045 ntBASIC18.18■□□□□ 0.5
TRAV1-2A0A0B4J238 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC18.18■□□□□ 0.5
TRAV1-2A0A0B4J238 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
TRAV1-2A0A0B4J238 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC18.18■□□□□ 0.5
TRAV1-2A0A0B4J238 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRAV1-2A0A0B4J238 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC18.18■□□□□ 0.5
TRAV1-2A0A0B4J238 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC18.17■□□□□ 0.5
TRAV1-2A0A0B4J238 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRAV1-2A0A0B4J238 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRAV1-2A0A0B4J238 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
TRAV1-2A0A0B4J238 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRAV1-2A0A0B4J238 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC18.17■□□□□ 0.5
TRAV1-2A0A0B4J238 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
TRAV1-2A0A0B4J238 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRAV1-2A0A0B4J238 AC010525.1-201ENST00000585559 441 ntBASIC18.17■□□□□ 0.5
TRAV1-2A0A0B4J238 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
TRAV1-2A0A0B4J238 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC18.17■□□□□ 0.5
TRAV1-2A0A0B4J238 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
TRAV1-2A0A0B4J238 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRAV1-2A0A0B4J238 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
TRAV1-2A0A0B4J238 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC18.17■□□□□ 0.5
TRAV1-2A0A0B4J238 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRAV1-2A0A0B4J238 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
TRAV1-2A0A0B4J238 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC18.17■□□□□ 0.5
TRAV1-2A0A0B4J238 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC18.17■□□□□ 0.5
TRAV1-2A0A0B4J238 AL512408.1-201ENST00000569378 2000 ntBASIC18.16■□□□□ 0.5
TRAV1-2A0A0B4J238 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC18.16■□□□□ 0.5
TRAV1-2A0A0B4J238 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TRAV1-2A0A0B4J238 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRAV1-2A0A0B4J238 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC18.16■□□□□ 0.5
TRAV1-2A0A0B4J238 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
TRAV1-2A0A0B4J238 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRAV1-2A0A0B4J238 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRAV1-2A0A0B4J238 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRAV1-2A0A0B4J238 GATM-206ENST00000558336 1522 ntTSL 2 BASIC18.16■□□□□ 0.5
TRAV1-2A0A0B4J238 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRAV1-2A0A0B4J238 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRAV1-2A0A0B4J238 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRAV1-2A0A0B4J238 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRAV1-2A0A0B4J238 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRAV1-2A0A0B4J238 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRAV1-2A0A0B4J238 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRAV1-2A0A0B4J238 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC18.16■□□□□ 0.5
TRAV1-2A0A0B4J238 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
TRAV1-2A0A0B4J238 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
TRAV1-2A0A0B4J238 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRAV1-2A0A0B4J238 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TRAV1-2A0A0B4J238 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRAV1-2A0A0B4J238 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TRAV1-2A0A0B4J238 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRAV1-2A0A0B4J238 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
TRAV1-2A0A0B4J238 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC18.15■□□□□ 0.5
TRAV1-2A0A0B4J238 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TRAV1-2A0A0B4J238 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC18.15■□□□□ 0.5
TRAV1-2A0A0B4J238 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC18.15■□□□□ 0.5
TRAV1-2A0A0B4J238 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TRAV1-2A0A0B4J238 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
TRAV1-2A0A0B4J238 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRAV1-2A0A0B4J238 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRAV1-2A0A0B4J238 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRAV1-2A0A0B4J238 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRAV1-2A0A0B4J238 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRAV1-2A0A0B4J238 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TRAV1-2A0A0B4J238 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC18.15■□□□□ 0.5
TRAV1-2A0A0B4J238 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.5
TRAV1-2A0A0B4J238 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC18.14■□□□□ 0.5
TRAV1-2A0A0B4J238 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
TRAV1-2A0A0B4J238 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms