Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
PCDHGA3Q9Y5H0 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PCDHGA3Q9Y5H0 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
PCDHGA3Q9Y5H0 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC20.3■□□□□ 0.84
PCDHGA3Q9Y5H0 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
PCDHGA3Q9Y5H0 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC20.3■□□□□ 0.84
PCDHGA3Q9Y5H0 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PCDHGA3Q9Y5H0 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
PCDHGA3Q9Y5H0 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
PCDHGA3Q9Y5H0 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC20.3■□□□□ 0.84
PCDHGA3Q9Y5H0 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
PCDHGA3Q9Y5H0 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC20.3■□□□□ 0.84
PCDHGA3Q9Y5H0 AL138781.1-201ENST00000566567 1274 ntBASIC20.3■□□□□ 0.84
PCDHGA3Q9Y5H0 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PCDHGA3Q9Y5H0 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
PCDHGA3Q9Y5H0 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC20.3■□□□□ 0.84
PCDHGA3Q9Y5H0 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PCDHGA3Q9Y5H0 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PCDHGA3Q9Y5H0 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PCDHGA3Q9Y5H0 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
PCDHGA3Q9Y5H0 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC20.29■□□□□ 0.84
PCDHGA3Q9Y5H0 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
PCDHGA3Q9Y5H0 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
PCDHGA3Q9Y5H0 APTR-203ENST00000430801 583 ntTSL 5 BASIC20.29■□□□□ 0.84
PCDHGA3Q9Y5H0 EEF1DP3-203ENST00000566025 782 ntBASIC20.29■□□□□ 0.84
PCDHGA3Q9Y5H0 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
PCDHGA3Q9Y5H0 AC013268.1-206ENST00000638368 961 ntBASIC20.29■□□□□ 0.84
PCDHGA3Q9Y5H0 AC112229.1-201ENST00000639295 961 ntBASIC20.29■□□□□ 0.84
PCDHGA3Q9Y5H0 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PCDHGA3Q9Y5H0 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
PCDHGA3Q9Y5H0 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
PCDHGA3Q9Y5H0 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
PCDHGA3Q9Y5H0 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
PCDHGA3Q9Y5H0 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PCDHGA3Q9Y5H0 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PCDHGA3Q9Y5H0 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC20.28■□□□□ 0.84
PCDHGA3Q9Y5H0 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
PCDHGA3Q9Y5H0 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PCDHGA3Q9Y5H0 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PCDHGA3Q9Y5H0 AC069152.1-201ENST00000438030 544 ntBASIC20.28■□□□□ 0.84
PCDHGA3Q9Y5H0 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC20.28■□□□□ 0.84
PCDHGA3Q9Y5H0 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
PCDHGA3Q9Y5H0 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
PCDHGA3Q9Y5H0 KLF13-207ENST00000560473 489 ntTSL 3 BASIC20.28■□□□□ 0.84
PCDHGA3Q9Y5H0 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC20.28■□□□□ 0.84
PCDHGA3Q9Y5H0 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
PCDHGA3Q9Y5H0 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
PCDHGA3Q9Y5H0 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PCDHGA3Q9Y5H0 AC053503.5-201ENST00000601508 636 ntBASIC20.28■□□□□ 0.84
PCDHGA3Q9Y5H0 AC133041.1-202ENST00000642053 222 ntBASIC20.28■□□□□ 0.84
PCDHGA3Q9Y5H0 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
PCDHGA3Q9Y5H0 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC20.27■□□□□ 0.84
PCDHGA3Q9Y5H0 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
PCDHGA3Q9Y5H0 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PCDHGA3Q9Y5H0 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PCDHGA3Q9Y5H0 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC20.27■□□□□ 0.84
PCDHGA3Q9Y5H0 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC20.27■□□□□ 0.84
PCDHGA3Q9Y5H0 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PCDHGA3Q9Y5H0 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PCDHGA3Q9Y5H0 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
PCDHGA3Q9Y5H0 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
PCDHGA3Q9Y5H0 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
PCDHGA3Q9Y5H0 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
PCDHGA3Q9Y5H0 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC20.26■□□□□ 0.83
PCDHGA3Q9Y5H0 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
PCDHGA3Q9Y5H0 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC20.26■□□□□ 0.83
PCDHGA3Q9Y5H0 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC20.26■□□□□ 0.83
PCDHGA3Q9Y5H0 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC20.26■□□□□ 0.83
PCDHGA3Q9Y5H0 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC20.26■□□□□ 0.83
PCDHGA3Q9Y5H0 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PCDHGA3Q9Y5H0 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PCDHGA3Q9Y5H0 TERF1P5-201ENST00000477545 1207 ntBASIC20.26■□□□□ 0.83
PCDHGA3Q9Y5H0 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
PCDHGA3Q9Y5H0 AC105036.2-201ENST00000569468 176 ntBASIC20.26■□□□□ 0.83
PCDHGA3Q9Y5H0 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
PCDHGA3Q9Y5H0 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
PCDHGA3Q9Y5H0 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.26■□□□□ 0.83
PCDHGA3Q9Y5H0 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
PCDHGA3Q9Y5H0 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
PCDHGA3Q9Y5H0 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
PCDHGA3Q9Y5H0 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
PCDHGA3Q9Y5H0 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PCDHGA3Q9Y5H0 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC20.25■□□□□ 0.83
PCDHGA3Q9Y5H0 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
PCDHGA3Q9Y5H0 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PCDHGA3Q9Y5H0 COMT-203ENST00000403184 2217 ntTSL 2 BASIC20.25■□□□□ 0.83
PCDHGA3Q9Y5H0 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PCDHGA3Q9Y5H0 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
PCDHGA3Q9Y5H0 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PCDHGA3Q9Y5H0 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC20.25■□□□□ 0.83
PCDHGA3Q9Y5H0 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC20.25■□□□□ 0.83
PCDHGA3Q9Y5H0 TSPY20P-201ENST00000450910 630 ntBASIC20.25■□□□□ 0.83
PCDHGA3Q9Y5H0 AC007322.4-201ENST00000509611 723 ntBASIC20.25■□□□□ 0.83
PCDHGA3Q9Y5H0 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
PCDHGA3Q9Y5H0 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC20.25■□□□□ 0.83
PCDHGA3Q9Y5H0 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC20.25■□□□□ 0.83
PCDHGA3Q9Y5H0 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC20.25■□□□□ 0.83
PCDHGA3Q9Y5H0 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
PCDHGA3Q9Y5H0 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC20.25■□□□□ 0.83
PCDHGA3Q9Y5H0 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms