Protein–RNA interactions for Protein: Q9UBI1

COMMD3, COMM domain-containing protein 3, humanhuman

Predictions only

Length 195 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3Q9UBI1 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
COMMD3Q9UBI1 PLK5-205ENST00000642079 1969 ntBASIC18.41■□□□□ 0.54
COMMD3Q9UBI1 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
COMMD3Q9UBI1 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
COMMD3Q9UBI1 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COMMD3Q9UBI1 AC112907.3-201ENST00000577781 2400 ntBASIC18.4■□□□□ 0.54
COMMD3Q9UBI1 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
COMMD3Q9UBI1 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COMMD3Q9UBI1 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
COMMD3Q9UBI1 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC18.4■□□□□ 0.54
COMMD3Q9UBI1 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC18.4■□□□□ 0.54
COMMD3Q9UBI1 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
COMMD3Q9UBI1 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC18.39■□□□□ 0.54
COMMD3Q9UBI1 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
COMMD3Q9UBI1 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COMMD3Q9UBI1 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COMMD3Q9UBI1 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
COMMD3Q9UBI1 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COMMD3Q9UBI1 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
COMMD3Q9UBI1 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COMMD3Q9UBI1 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
COMMD3Q9UBI1 ABHD17AP3-201ENST00000503096 1137 ntBASIC18.39■□□□□ 0.53
COMMD3Q9UBI1 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC18.39■□□□□ 0.53
COMMD3Q9UBI1 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COMMD3Q9UBI1 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC18.39■□□□□ 0.53
COMMD3Q9UBI1 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC18.39■□□□□ 0.53
COMMD3Q9UBI1 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
COMMD3Q9UBI1 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COMMD3Q9UBI1 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC18.39■□□□□ 0.53
COMMD3Q9UBI1 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COMMD3Q9UBI1 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
COMMD3Q9UBI1 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC18.39■□□□□ 0.53
COMMD3Q9UBI1 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
COMMD3Q9UBI1 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COMMD3Q9UBI1 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
COMMD3Q9UBI1 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
COMMD3Q9UBI1 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
COMMD3Q9UBI1 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC18.39■□□□□ 0.53
COMMD3Q9UBI1 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC18.38■□□□□ 0.53
COMMD3Q9UBI1 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
COMMD3Q9UBI1 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC18.38■□□□□ 0.53
COMMD3Q9UBI1 AC027702.1-201ENST00000563810 1770 ntBASIC18.38■□□□□ 0.53
COMMD3Q9UBI1 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COMMD3Q9UBI1 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
COMMD3Q9UBI1 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COMMD3Q9UBI1 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COMMD3Q9UBI1 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
COMMD3Q9UBI1 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC18.38■□□□□ 0.53
COMMD3Q9UBI1 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC18.38■□□□□ 0.53
COMMD3Q9UBI1 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
COMMD3Q9UBI1 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COMMD3Q9UBI1 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COMMD3Q9UBI1 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COMMD3Q9UBI1 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COMMD3Q9UBI1 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
COMMD3Q9UBI1 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COMMD3Q9UBI1 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
COMMD3Q9UBI1 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
COMMD3Q9UBI1 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC18.38■□□□□ 0.53
COMMD3Q9UBI1 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COMMD3Q9UBI1 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC18.38■□□□□ 0.53
COMMD3Q9UBI1 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COMMD3Q9UBI1 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
COMMD3Q9UBI1 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COMMD3Q9UBI1 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
COMMD3Q9UBI1 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
COMMD3Q9UBI1 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC18.37■□□□□ 0.53
COMMD3Q9UBI1 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COMMD3Q9UBI1 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
COMMD3Q9UBI1 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COMMD3Q9UBI1 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COMMD3Q9UBI1 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
COMMD3Q9UBI1 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COMMD3Q9UBI1 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC18.37■□□□□ 0.53
COMMD3Q9UBI1 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
COMMD3Q9UBI1 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC18.37■□□□□ 0.53
COMMD3Q9UBI1 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC18.37■□□□□ 0.53
COMMD3Q9UBI1 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COMMD3Q9UBI1 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
COMMD3Q9UBI1 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COMMD3Q9UBI1 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
COMMD3Q9UBI1 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
COMMD3Q9UBI1 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC18.37■□□□□ 0.53
COMMD3Q9UBI1 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC18.37■□□□□ 0.53
COMMD3Q9UBI1 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
COMMD3Q9UBI1 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
COMMD3Q9UBI1 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COMMD3Q9UBI1 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COMMD3Q9UBI1 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COMMD3Q9UBI1 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COMMD3Q9UBI1 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COMMD3Q9UBI1 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COMMD3Q9UBI1 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COMMD3Q9UBI1 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
COMMD3Q9UBI1 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COMMD3Q9UBI1 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COMMD3Q9UBI1 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC18.36■□□□□ 0.53
COMMD3Q9UBI1 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
COMMD3Q9UBI1 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC18.36■□□□□ 0.53
COMMD3Q9UBI1 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC18.36■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms