Protein–RNA interactions for Protein: Q9H9A6

LRRC40, Leucine-rich repeat-containing protein 40, humanhuman

Predictions only

Length 602 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC40Q9H9A6 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
LRRC40Q9H9A6 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC21.27■■□□□ 1
LRRC40Q9H9A6 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC21.27■□□□□ 0.99
LRRC40Q9H9A6 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC21.27■□□□□ 0.99
LRRC40Q9H9A6 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC21.27■□□□□ 0.99
LRRC40Q9H9A6 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC21.27■□□□□ 0.99
LRRC40Q9H9A6 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
LRRC40Q9H9A6 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
LRRC40Q9H9A6 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC21.26■□□□□ 0.99
LRRC40Q9H9A6 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
LRRC40Q9H9A6 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
LRRC40Q9H9A6 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
LRRC40Q9H9A6 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
LRRC40Q9H9A6 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC21.26■□□□□ 0.99
LRRC40Q9H9A6 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
LRRC40Q9H9A6 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC21.26■□□□□ 0.99
LRRC40Q9H9A6 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
LRRC40Q9H9A6 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
LRRC40Q9H9A6 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
LRRC40Q9H9A6 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
LRRC40Q9H9A6 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
LRRC40Q9H9A6 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
LRRC40Q9H9A6 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
LRRC40Q9H9A6 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
LRRC40Q9H9A6 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
LRRC40Q9H9A6 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
LRRC40Q9H9A6 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
LRRC40Q9H9A6 KRT87P-202ENST00000534226 1464 ntBASIC21.25■□□□□ 0.99
LRRC40Q9H9A6 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
LRRC40Q9H9A6 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
LRRC40Q9H9A6 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
LRRC40Q9H9A6 LINC02228-203ENST00000641970 1355 ntBASIC21.24■□□□□ 0.99
LRRC40Q9H9A6 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
LRRC40Q9H9A6 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
LRRC40Q9H9A6 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
LRRC40Q9H9A6 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC21.24■□□□□ 0.99
LRRC40Q9H9A6 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
LRRC40Q9H9A6 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
LRRC40Q9H9A6 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC21.24■□□□□ 0.99
LRRC40Q9H9A6 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
LRRC40Q9H9A6 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC21.24■□□□□ 0.99
LRRC40Q9H9A6 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
LRRC40Q9H9A6 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
LRRC40Q9H9A6 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
LRRC40Q9H9A6 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
LRRC40Q9H9A6 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
LRRC40Q9H9A6 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
LRRC40Q9H9A6 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
LRRC40Q9H9A6 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC21.23■□□□□ 0.99
LRRC40Q9H9A6 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC21.23■□□□□ 0.99
LRRC40Q9H9A6 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC21.23■□□□□ 0.99
LRRC40Q9H9A6 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC21.23■□□□□ 0.99
LRRC40Q9H9A6 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
LRRC40Q9H9A6 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC21.23■□□□□ 0.99
LRRC40Q9H9A6 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
LRRC40Q9H9A6 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
LRRC40Q9H9A6 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC21.22■□□□□ 0.99
LRRC40Q9H9A6 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC21.22■□□□□ 0.99
LRRC40Q9H9A6 JTB-203ENST00000368589 1216 ntTSL 2 BASIC21.22■□□□□ 0.99
LRRC40Q9H9A6 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC21.22■□□□□ 0.99
LRRC40Q9H9A6 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC21.22■□□□□ 0.99
LRRC40Q9H9A6 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC21.22■□□□□ 0.99
LRRC40Q9H9A6 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
LRRC40Q9H9A6 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
LRRC40Q9H9A6 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC21.22■□□□□ 0.99
LRRC40Q9H9A6 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
LRRC40Q9H9A6 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
LRRC40Q9H9A6 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
LRRC40Q9H9A6 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC21.21■□□□□ 0.99
LRRC40Q9H9A6 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
LRRC40Q9H9A6 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
LRRC40Q9H9A6 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC21.21■□□□□ 0.99
LRRC40Q9H9A6 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
LRRC40Q9H9A6 AC123595.1-201ENST00000440769 1046 ntBASIC21.21■□□□□ 0.99
LRRC40Q9H9A6 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
LRRC40Q9H9A6 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
LRRC40Q9H9A6 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LRRC40Q9H9A6 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LRRC40Q9H9A6 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC21.21■□□□□ 0.99
LRRC40Q9H9A6 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LRRC40Q9H9A6 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC21.21■□□□□ 0.99
LRRC40Q9H9A6 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
LRRC40Q9H9A6 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
LRRC40Q9H9A6 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
LRRC40Q9H9A6 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
LRRC40Q9H9A6 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC21.2■□□□□ 0.98
LRRC40Q9H9A6 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
LRRC40Q9H9A6 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
LRRC40Q9H9A6 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LRRC40Q9H9A6 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
LRRC40Q9H9A6 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LRRC40Q9H9A6 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
LRRC40Q9H9A6 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
LRRC40Q9H9A6 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LRRC40Q9H9A6 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
LRRC40Q9H9A6 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
LRRC40Q9H9A6 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LRRC40Q9H9A6 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC21.2■□□□□ 0.98
LRRC40Q9H9A6 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LRRC40Q9H9A6 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms