Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
RTF1Q92541 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC27.42■■□□□ 1.98
RTF1Q92541 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC27.42■■□□□ 1.98
RTF1Q92541 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC27.42■■□□□ 1.98
RTF1Q92541 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC27.42■■□□□ 1.98
RTF1Q92541 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC27.42■■□□□ 1.98
RTF1Q92541 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC27.41■■□□□ 1.98
RTF1Q92541 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
RTF1Q92541 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
RTF1Q92541 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
RTF1Q92541 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
RTF1Q92541 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
RTF1Q92541 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC27.41■■□□□ 1.98
RTF1Q92541 AL138781.1-201ENST00000566567 1274 ntBASIC27.41■■□□□ 1.98
RTF1Q92541 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
RTF1Q92541 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC27.41■■□□□ 1.98
RTF1Q92541 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
RTF1Q92541 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
RTF1Q92541 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC27.4■■□□□ 1.98
RTF1Q92541 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
RTF1Q92541 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
RTF1Q92541 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC27.4■■□□□ 1.98
RTF1Q92541 AC245052.3-201ENST00000450182 901 ntBASIC27.4■■□□□ 1.98
RTF1Q92541 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC27.4■■□□□ 1.98
RTF1Q92541 AL162412.1-201ENST00000567129 965 ntBASIC27.4■■□□□ 1.98
RTF1Q92541 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC27.4■■□□□ 1.98
RTF1Q92541 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC27.4■■□□□ 1.98
RTF1Q92541 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC27.4■■□□□ 1.98
RTF1Q92541 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC27.4■■□□□ 1.98
RTF1Q92541 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC27.4■■□□□ 1.98
RTF1Q92541 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC27.39■■□□□ 1.98
RTF1Q92541 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC27.39■■□□□ 1.98
RTF1Q92541 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC27.39■■□□□ 1.98
RTF1Q92541 LSR-203ENST00000360798 1963 ntTSL 2 BASIC27.39■■□□□ 1.98
RTF1Q92541 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC27.39■■□□□ 1.98
RTF1Q92541 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
RTF1Q92541 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC27.39■■□□□ 1.98
RTF1Q92541 CD44-222ENST00000526025 1052 ntTSL 2 BASIC27.39■■□□□ 1.98
RTF1Q92541 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC27.39■■□□□ 1.98
RTF1Q92541 AC016405.3-201ENST00000607710 860 ntBASIC27.39■■□□□ 1.98
RTF1Q92541 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC27.39■■□□□ 1.98
RTF1Q92541 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC27.39■■□□□ 1.98
RTF1Q92541 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.97
RTF1Q92541 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC27.39■■□□□ 1.97
RTF1Q92541 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
RTF1Q92541 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
RTF1Q92541 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
RTF1Q92541 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC27.38■■□□□ 1.97
RTF1Q92541 GOLGA2P6-201ENST00000340929 2049 ntBASIC27.38■■□□□ 1.97
RTF1Q92541 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC27.38■■□□□ 1.97
RTF1Q92541 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
RTF1Q92541 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC27.38■■□□□ 1.97
RTF1Q92541 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC27.38■■□□□ 1.97
RTF1Q92541 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC27.38■■□□□ 1.97
RTF1Q92541 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
RTF1Q92541 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC27.38■■□□□ 1.97
RTF1Q92541 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC27.38■■□□□ 1.97
RTF1Q92541 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC27.37■■□□□ 1.97
RTF1Q92541 MKRN4P-201ENST00000444706 1521 ntBASIC27.37■■□□□ 1.97
RTF1Q92541 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
RTF1Q92541 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
RTF1Q92541 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC27.37■■□□□ 1.97
RTF1Q92541 AL512625.2-201ENST00000417533 625 ntBASIC27.37■■□□□ 1.97
RTF1Q92541 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
RTF1Q92541 APTR-205ENST00000447009 902 ntTSL 2 BASIC27.37■■□□□ 1.97
RTF1Q92541 AC093787.1-201ENST00000450396 207 ntBASIC27.37■■□□□ 1.97
RTF1Q92541 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
RTF1Q92541 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC27.37■■□□□ 1.97
RTF1Q92541 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
RTF1Q92541 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC27.37■■□□□ 1.97
RTF1Q92541 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC27.37■■□□□ 1.97
RTF1Q92541 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
RTF1Q92541 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
RTF1Q92541 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
RTF1Q92541 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC27.37■■□□□ 1.97
RTF1Q92541 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC27.36■■□□□ 1.97
RTF1Q92541 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
RTF1Q92541 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
RTF1Q92541 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
RTF1Q92541 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
RTF1Q92541 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC27.36■■□□□ 1.97
RTF1Q92541 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC27.36■■□□□ 1.97
RTF1Q92541 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
RTF1Q92541 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC27.36■■□□□ 1.97
RTF1Q92541 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
RTF1Q92541 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC27.36■■□□□ 1.97
RTF1Q92541 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
RTF1Q92541 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC27.35■■□□□ 1.97
RTF1Q92541 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC27.35■■□□□ 1.97
RTF1Q92541 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC27.35■■□□□ 1.97
RTF1Q92541 PBX1-209ENST00000485769 834 ntTSL 2 BASIC27.35■■□□□ 1.97
RTF1Q92541 PHB2-213ENST00000546111 858 ntTSL 2 BASIC27.35■■□□□ 1.97
RTF1Q92541 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC27.35■■□□□ 1.97
RTF1Q92541 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
RTF1Q92541 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
RTF1Q92541 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
RTF1Q92541 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
RTF1Q92541 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC27.35■■□□□ 1.97
RTF1Q92541 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC27.34■■□□□ 1.97
RTF1Q92541 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms