Protein–RNA interactions for Protein: P62857

RPS28, 40S ribosomal protein S28, humanhuman

Known RBP Predictions only

Length 69 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28P62857 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
RPS28P62857 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC12.3□□□□□ -0.44
RPS28P62857 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
RPS28P62857 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
RPS28P62857 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC12.3□□□□□ -0.44
RPS28P62857 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC12.3□□□□□ -0.44
RPS28P62857 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC12.3□□□□□ -0.44
RPS28P62857 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
RPS28P62857 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
RPS28P62857 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
RPS28P62857 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC12.3□□□□□ -0.44
RPS28P62857 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
RPS28P62857 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC12.3□□□□□ -0.44
RPS28P62857 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
RPS28P62857 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
RPS28P62857 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
RPS28P62857 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC12.29□□□□□ -0.44
RPS28P62857 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC12.29□□□□□ -0.44
RPS28P62857 H19-210ENST00000439725 1929 ntTSL 2 BASIC12.29□□□□□ -0.44
RPS28P62857 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
RPS28P62857 FEM1AP4-201ENST00000443167 1987 ntBASIC12.29□□□□□ -0.44
RPS28P62857 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC12.29□□□□□ -0.44
RPS28P62857 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
RPS28P62857 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
RPS28P62857 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC12.29□□□□□ -0.44
RPS28P62857 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
RPS28P62857 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.44
RPS28P62857 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC12.29□□□□□ -0.44
RPS28P62857 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
RPS28P62857 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
RPS28P62857 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC12.29□□□□□ -0.44
RPS28P62857 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC12.29□□□□□ -0.44
RPS28P62857 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC12.29□□□□□ -0.44
RPS28P62857 HTR7P1-202ENST00000624664 4411 ntBASIC12.29□□□□□ -0.44
RPS28P62857 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
RPS28P62857 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC12.29□□□□□ -0.44
RPS28P62857 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
RPS28P62857 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
RPS28P62857 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
RPS28P62857 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
RPS28P62857 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC12.28□□□□□ -0.44
RPS28P62857 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC12.28□□□□□ -0.44
RPS28P62857 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC12.28□□□□□ -0.44
RPS28P62857 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
RPS28P62857 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
RPS28P62857 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
RPS28P62857 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
RPS28P62857 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
RPS28P62857 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
RPS28P62857 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC12.28□□□□□ -0.44
RPS28P62857 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
RPS28P62857 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
RPS28P62857 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
RPS28P62857 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
RPS28P62857 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
RPS28P62857 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
RPS28P62857 CEP83-AS1-201ENST00000623122 2482 ntBASIC12.28□□□□□ -0.44
RPS28P62857 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
RPS28P62857 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
RPS28P62857 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC12.28□□□□□ -0.44
RPS28P62857 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
RPS28P62857 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC12.27□□□□□ -0.44
RPS28P62857 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.44
RPS28P62857 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.44
RPS28P62857 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
RPS28P62857 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC12.27□□□□□ -0.44
RPS28P62857 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
RPS28P62857 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
RPS28P62857 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
RPS28P62857 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
RPS28P62857 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
RPS28P62857 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC12.27□□□□□ -0.44
RPS28P62857 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC12.27□□□□□ -0.45
RPS28P62857 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.45
RPS28P62857 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.45
RPS28P62857 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC12.27□□□□□ -0.45
RPS28P62857 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC12.27□□□□□ -0.45
RPS28P62857 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.45
RPS28P62857 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC12.27□□□□□ -0.45
RPS28P62857 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC12.27□□□□□ -0.45
RPS28P62857 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.45
RPS28P62857 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC12.27□□□□□ -0.45
RPS28P62857 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
RPS28P62857 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
RPS28P62857 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
RPS28P62857 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC12.27□□□□□ -0.45
RPS28P62857 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
RPS28P62857 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
RPS28P62857 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
RPS28P62857 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.45
RPS28P62857 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.45
RPS28P62857 AL390961.4-201ENST00000623958 2535 ntBASIC12.27□□□□□ -0.45
RPS28P62857 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
RPS28P62857 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC12.26□□□□□ -0.45
RPS28P62857 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
RPS28P62857 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
RPS28P62857 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
RPS28P62857 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC12.26□□□□□ -0.45
RPS28P62857 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC12.26□□□□□ -0.45
RPS28P62857 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC12.26□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms