Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
CFAP54Q96N23 RNF126P1-201ENST00000567452 1320 ntBASIC26.96■■□□□ 1.91
CFAP54Q96N23 SRP68-213ENST00000629930 165 ntTSL 5 BASIC26.96■■□□□ 1.91
CFAP54Q96N23 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC26.92■■□□□ 1.9
CFAP54Q96N23 AC018358.1-201ENST00000631079 1402 ntBASIC26.92■■□□□ 1.9
CFAP54Q96N23 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC26.89■■□□□ 1.9
CFAP54Q96N23 ILK-212ENST00000532063 1617 ntTSL 2 BASIC26.89■■□□□ 1.9
CFAP54Q96N23 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC26.89■■□□□ 1.9
CFAP54Q96N23 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
CFAP54Q96N23 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
CFAP54Q96N23 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
CFAP54Q96N23 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
CFAP54Q96N23 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC26.86■■□□□ 1.89
CFAP54Q96N23 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
CFAP54Q96N23 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC26.86■■□□□ 1.89
CFAP54Q96N23 AL592295.1-201ENST00000400984 884 ntBASIC26.86■■□□□ 1.89
CFAP54Q96N23 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC26.86■■□□□ 1.89
CFAP54Q96N23 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC26.86■■□□□ 1.89
CFAP54Q96N23 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC26.86■■□□□ 1.89
CFAP54Q96N23 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC26.85■■□□□ 1.89
CFAP54Q96N23 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
CFAP54Q96N23 NTF6A-201ENST00000591175 560 ntBASIC26.85■■□□□ 1.89
CFAP54Q96N23 CIB2-204ENST00000557846 934 ntTSL 3 BASIC26.84■■□□□ 1.89
CFAP54Q96N23 METRNL-202ENST00000570778 967 ntTSL 5 BASIC26.84■■□□□ 1.89
CFAP54Q96N23 AC012354.3-201ENST00000623734 483 ntBASIC26.82■■□□□ 1.88
CFAP54Q96N23 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC26.81■■□□□ 1.88
CFAP54Q96N23 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
CFAP54Q96N23 MTURN-203ENST00000409688 843 ntTSL 2 BASIC26.81■■□□□ 1.88
CFAP54Q96N23 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
CFAP54Q96N23 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC26.79■■□□□ 1.88
CFAP54Q96N23 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
CFAP54Q96N23 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC26.78■■□□□ 1.88
CFAP54Q96N23 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
CFAP54Q96N23 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
CFAP54Q96N23 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
CFAP54Q96N23 GPX1-201ENST00000419349 1106 ntBASIC26.75■■□□□ 1.87
CFAP54Q96N23 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC26.75■■□□□ 1.87
CFAP54Q96N23 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC26.74■■□□□ 1.87
CFAP54Q96N23 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
CFAP54Q96N23 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
CFAP54Q96N23 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
CFAP54Q96N23 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC26.72■■□□□ 1.87
CFAP54Q96N23 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC26.72■■□□□ 1.87
CFAP54Q96N23 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC26.71■■□□□ 1.87
CFAP54Q96N23 MIR6090-201ENST00000622481 60 ntBASIC26.71■■□□□ 1.87
CFAP54Q96N23 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC26.71■■□□□ 1.87
CFAP54Q96N23 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC26.71■■□□□ 1.87
CFAP54Q96N23 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC26.7■■□□□ 1.87
CFAP54Q96N23 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC26.7■■□□□ 1.87
CFAP54Q96N23 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC26.7■■□□□ 1.87
CFAP54Q96N23 AC008813.1-201ENST00000536597 885 ntBASIC26.7■■□□□ 1.86
CFAP54Q96N23 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC26.7■■□□□ 1.86
CFAP54Q96N23 AL033527.3-201ENST00000566366 1196 ntBASIC26.69■■□□□ 1.86
CFAP54Q96N23 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC26.69■■□□□ 1.86
CFAP54Q96N23 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC26.69■■□□□ 1.86
CFAP54Q96N23 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
CFAP54Q96N23 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
CFAP54Q96N23 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC26.68■■□□□ 1.86
CFAP54Q96N23 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC26.66■■□□□ 1.86
CFAP54Q96N23 DUX4L13-201ENST00000554103 1267 ntBASIC26.66■■□□□ 1.86
CFAP54Q96N23 DUX4L15-201ENST00000611059 1267 ntBASIC26.66■■□□□ 1.86
CFAP54Q96N23 DUX4L23-201ENST00000615195 1269 ntBASIC26.66■■□□□ 1.86
CFAP54Q96N23 DUX4L24-201ENST00000617576 1269 ntBASIC26.66■■□□□ 1.86
CFAP54Q96N23 DUX4L22-201ENST00000618238 1269 ntBASIC26.66■■□□□ 1.86
CFAP54Q96N23 DUX4L20-201ENST00000619712 1269 ntBASIC26.66■■□□□ 1.86
CFAP54Q96N23 DUX4L21-201ENST00000622058 1269 ntBASIC26.66■■□□□ 1.86
CFAP54Q96N23 DUX4L10-201ENST00000622460 1267 ntBASIC26.66■■□□□ 1.86
CFAP54Q96N23 DUX4L25-201ENST00000624915 1269 ntBASIC26.66■■□□□ 1.86
CFAP54Q96N23 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
CFAP54Q96N23 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
CFAP54Q96N23 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
CFAP54Q96N23 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC26.64■■□□□ 1.85
CFAP54Q96N23 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC26.62■■□□□ 1.85
CFAP54Q96N23 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
CFAP54Q96N23 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
CFAP54Q96N23 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
CFAP54Q96N23 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
CFAP54Q96N23 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
CFAP54Q96N23 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
CFAP54Q96N23 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC26.61■■□□□ 1.85
CFAP54Q96N23 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC26.61■■□□□ 1.85
CFAP54Q96N23 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC26.61■■□□□ 1.85
CFAP54Q96N23 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
CFAP54Q96N23 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC26.6■■□□□ 1.85
CFAP54Q96N23 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC26.59■■□□□ 1.85
CFAP54Q96N23 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC26.59■■□□□ 1.85
CFAP54Q96N23 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC26.58■■□□□ 1.85
CFAP54Q96N23 HES6-205ENST00000409356 528 ntTSL 2 BASIC26.57■■□□□ 1.84
CFAP54Q96N23 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
CFAP54Q96N23 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
CFAP54Q96N23 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC26.56■■□□□ 1.84
CFAP54Q96N23 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
CFAP54Q96N23 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
CFAP54Q96N23 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC26.56■■□□□ 1.84
CFAP54Q96N23 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
CFAP54Q96N23 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
CFAP54Q96N23 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC26.55■■□□□ 1.84
CFAP54Q96N23 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC26.54■■□□□ 1.84
CFAP54Q96N23 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC26.54■■□□□ 1.84
CFAP54Q96N23 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms