Protein–RNA interactions for Protein: Q8TF05

PPP4R1, Serine/threonine-protein phosphatase 4 regulatory subunit 1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R1Q8TF05 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
PPP4R1Q8TF05 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC26.48■■□□□ 1.83
PPP4R1Q8TF05 RARRES2P7-201ENST00000567349 469 ntBASIC26.48■■□□□ 1.83
PPP4R1Q8TF05 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC26.47■■□□□ 1.83
PPP4R1Q8TF05 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC26.47■■□□□ 1.83
PPP4R1Q8TF05 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC26.46■■□□□ 1.83
PPP4R1Q8TF05 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC26.46■■□□□ 1.83
PPP4R1Q8TF05 ST7-AS1-201ENST00000456775 1889 ntBASIC26.45■■□□□ 1.83
PPP4R1Q8TF05 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.83
PPP4R1Q8TF05 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
PPP4R1Q8TF05 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
PPP4R1Q8TF05 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC26.44■■□□□ 1.82
PPP4R1Q8TF05 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
PPP4R1Q8TF05 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
PPP4R1Q8TF05 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
PPP4R1Q8TF05 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC26.43■■□□□ 1.82
PPP4R1Q8TF05 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC26.43■■□□□ 1.82
PPP4R1Q8TF05 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC26.43■■□□□ 1.82
PPP4R1Q8TF05 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
PPP4R1Q8TF05 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
PPP4R1Q8TF05 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC26.41■■□□□ 1.82
PPP4R1Q8TF05 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC26.41■■□□□ 1.82
PPP4R1Q8TF05 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC26.4■■□□□ 1.82
PPP4R1Q8TF05 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC26.4■■□□□ 1.82
PPP4R1Q8TF05 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC26.4■■□□□ 1.82
PPP4R1Q8TF05 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC26.39■■□□□ 1.82
PPP4R1Q8TF05 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
PPP4R1Q8TF05 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC26.39■■□□□ 1.82
PPP4R1Q8TF05 AL161658.1-201ENST00000623641 1967 ntBASIC26.38■■□□□ 1.81
PPP4R1Q8TF05 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC26.38■■□□□ 1.81
PPP4R1Q8TF05 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC26.38■■□□□ 1.81
PPP4R1Q8TF05 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC26.38■■□□□ 1.81
PPP4R1Q8TF05 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC26.38■■□□□ 1.81
PPP4R1Q8TF05 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC26.36■■□□□ 1.81
PPP4R1Q8TF05 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
PPP4R1Q8TF05 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
PPP4R1Q8TF05 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
PPP4R1Q8TF05 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
PPP4R1Q8TF05 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC26.33■■□□□ 1.81
PPP4R1Q8TF05 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC26.33■■□□□ 1.81
PPP4R1Q8TF05 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC26.33■■□□□ 1.81
PPP4R1Q8TF05 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC26.33■■□□□ 1.81
PPP4R1Q8TF05 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
PPP4R1Q8TF05 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC26.31■■□□□ 1.8
PPP4R1Q8TF05 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC26.31■■□□□ 1.8
PPP4R1Q8TF05 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
PPP4R1Q8TF05 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC26.29■■□□□ 1.8
PPP4R1Q8TF05 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC26.29■■□□□ 1.8
PPP4R1Q8TF05 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC26.28■■□□□ 1.8
PPP4R1Q8TF05 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
PPP4R1Q8TF05 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
PPP4R1Q8TF05 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
PPP4R1Q8TF05 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
PPP4R1Q8TF05 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
PPP4R1Q8TF05 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC26.27■■□□□ 1.8
PPP4R1Q8TF05 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC26.26■■□□□ 1.79
PPP4R1Q8TF05 KLF16-203ENST00000592313 508 ntTSL 3 BASIC26.26■■□□□ 1.79
PPP4R1Q8TF05 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC26.26■■□□□ 1.79
PPP4R1Q8TF05 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
PPP4R1Q8TF05 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
PPP4R1Q8TF05 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC26.25■■□□□ 1.79
PPP4R1Q8TF05 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC26.24■■□□□ 1.79
PPP4R1Q8TF05 AC097358.2-201ENST00000607541 1159 ntBASIC26.24■■□□□ 1.79
PPP4R1Q8TF05 SETD8P1-201ENST00000623146 1180 ntBASIC26.24■■□□□ 1.79
PPP4R1Q8TF05 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC26.23■■□□□ 1.79
PPP4R1Q8TF05 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC26.21■■□□□ 1.79
PPP4R1Q8TF05 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC26.21■■□□□ 1.79
PPP4R1Q8TF05 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
PPP4R1Q8TF05 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC26.2■■□□□ 1.78
PPP4R1Q8TF05 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC26.19■■□□□ 1.78
PPP4R1Q8TF05 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
PPP4R1Q8TF05 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
PPP4R1Q8TF05 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
PPP4R1Q8TF05 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
PPP4R1Q8TF05 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
PPP4R1Q8TF05 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC26.18■■□□□ 1.78
PPP4R1Q8TF05 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
PPP4R1Q8TF05 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
PPP4R1Q8TF05 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC26.16■■□□□ 1.78
PPP4R1Q8TF05 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC26.16■■□□□ 1.78
PPP4R1Q8TF05 AC136428.2-201ENST00000563187 214 ntBASIC26.16■■□□□ 1.78
PPP4R1Q8TF05 AL135925.1-201ENST00000605920 1701 ntBASIC26.16■■□□□ 1.78
PPP4R1Q8TF05 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
PPP4R1Q8TF05 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
PPP4R1Q8TF05 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC26.14■■□□□ 1.77
PPP4R1Q8TF05 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
PPP4R1Q8TF05 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
PPP4R1Q8TF05 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
PPP4R1Q8TF05 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC26.13■■□□□ 1.77
PPP4R1Q8TF05 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC26.13■■□□□ 1.77
PPP4R1Q8TF05 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
PPP4R1Q8TF05 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
PPP4R1Q8TF05 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC26.12■■□□□ 1.77
PPP4R1Q8TF05 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
PPP4R1Q8TF05 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
PPP4R1Q8TF05 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
PPP4R1Q8TF05 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
PPP4R1Q8TF05 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
PPP4R1Q8TF05 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC26.1■■□□□ 1.77
PPP4R1Q8TF05 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC26.1■■□□□ 1.77
Retrieved 100 of 98,524 protein–RNA pairs in 13.4 ms