Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC31.84■■■□□ 2.69
NKX2-3Q8TAU0 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC31.83■■■□□ 2.69
NKX2-3Q8TAU0 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC31.82■■■□□ 2.69
NKX2-3Q8TAU0 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC31.82■■■□□ 2.68
NKX2-3Q8TAU0 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC31.82■■■□□ 2.68
NKX2-3Q8TAU0 CHML-205ENST00000638160 705 ntTSL 3 BASIC31.82■■■□□ 2.68
NKX2-3Q8TAU0 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC31.81■■■□□ 2.68
NKX2-3Q8TAU0 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
NKX2-3Q8TAU0 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC31.8■■■□□ 2.68
NKX2-3Q8TAU0 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC31.8■■■□□ 2.68
NKX2-3Q8TAU0 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
NKX2-3Q8TAU0 DENR-202ENST00000455982 1052 ntTSL 5 BASIC31.79■■■□□ 2.68
NKX2-3Q8TAU0 ST7-205ENST00000393446 2114 ntTSL 5 BASIC31.79■■■□□ 2.68
NKX2-3Q8TAU0 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC31.78■■■□□ 2.68
NKX2-3Q8TAU0 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC31.78■■■□□ 2.68
NKX2-3Q8TAU0 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
NKX2-3Q8TAU0 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC31.77■■■□□ 2.68
NKX2-3Q8TAU0 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC31.77■■■□□ 2.68
NKX2-3Q8TAU0 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC31.77■■■□□ 2.68
NKX2-3Q8TAU0 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC31.76■■■□□ 2.67
NKX2-3Q8TAU0 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC31.76■■■□□ 2.67
NKX2-3Q8TAU0 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC31.75■■■□□ 2.67
NKX2-3Q8TAU0 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
NKX2-3Q8TAU0 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC31.75■■■□□ 2.67
NKX2-3Q8TAU0 MIR762-201ENST00000390236 83 ntBASIC31.74■■■□□ 2.67
NKX2-3Q8TAU0 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC31.73■■■□□ 2.67
NKX2-3Q8TAU0 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC31.72■■■□□ 2.67
NKX2-3Q8TAU0 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC31.72■■■□□ 2.67
NKX2-3Q8TAU0 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
NKX2-3Q8TAU0 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
NKX2-3Q8TAU0 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
NKX2-3Q8TAU0 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC31.71■■■□□ 2.67
NKX2-3Q8TAU0 ZNRF2P2-203ENST00000454624 420 ntBASIC31.71■■■□□ 2.67
NKX2-3Q8TAU0 AC005559.1-201ENST00000589661 871 ntBASIC31.71■■■□□ 2.67
NKX2-3Q8TAU0 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
NKX2-3Q8TAU0 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
NKX2-3Q8TAU0 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC31.69■■■□□ 2.66
NKX2-3Q8TAU0 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC31.68■■■□□ 2.66
NKX2-3Q8TAU0 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC31.67■■■□□ 2.66
NKX2-3Q8TAU0 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC31.67■■■□□ 2.66
NKX2-3Q8TAU0 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
NKX2-3Q8TAU0 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC31.67■■■□□ 2.66
NKX2-3Q8TAU0 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
NKX2-3Q8TAU0 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
NKX2-3Q8TAU0 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC31.66■■■□□ 2.66
NKX2-3Q8TAU0 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC31.65■■■□□ 2.66
NKX2-3Q8TAU0 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
NKX2-3Q8TAU0 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC31.65■■■□□ 2.66
NKX2-3Q8TAU0 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
NKX2-3Q8TAU0 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC31.63■■■□□ 2.65
NKX2-3Q8TAU0 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC31.62■■■□□ 2.65
NKX2-3Q8TAU0 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
NKX2-3Q8TAU0 BOD1-206ENST00000480951 814 ntTSL 2 BASIC31.62■■■□□ 2.65
NKX2-3Q8TAU0 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
NKX2-3Q8TAU0 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC31.61■■■□□ 2.65
NKX2-3Q8TAU0 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC31.6■■■□□ 2.65
NKX2-3Q8TAU0 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC31.6■■■□□ 2.65
NKX2-3Q8TAU0 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
NKX2-3Q8TAU0 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
NKX2-3Q8TAU0 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
NKX2-3Q8TAU0 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC31.58■■■□□ 2.65
NKX2-3Q8TAU0 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
NKX2-3Q8TAU0 ST7-202ENST00000323984 2142 ntTSL 5 BASIC31.58■■■□□ 2.65
NKX2-3Q8TAU0 ST7-207ENST00000393449 2127 ntTSL 5 BASIC31.58■■■□□ 2.65
NKX2-3Q8TAU0 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC31.57■■■□□ 2.64
NKX2-3Q8TAU0 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
NKX2-3Q8TAU0 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC31.57■■■□□ 2.64
NKX2-3Q8TAU0 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
NKX2-3Q8TAU0 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC31.57■■■□□ 2.64
NKX2-3Q8TAU0 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC31.57■■■□□ 2.64
NKX2-3Q8TAU0 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC31.56■■■□□ 2.64
NKX2-3Q8TAU0 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
NKX2-3Q8TAU0 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC31.54■■■□□ 2.64
NKX2-3Q8TAU0 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC31.53■■■□□ 2.64
NKX2-3Q8TAU0 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
NKX2-3Q8TAU0 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC31.53■■■□□ 2.64
NKX2-3Q8TAU0 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC31.53■■■□□ 2.64
NKX2-3Q8TAU0 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC31.53■■■□□ 2.64
NKX2-3Q8TAU0 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
NKX2-3Q8TAU0 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC31.52■■■□□ 2.64
NKX2-3Q8TAU0 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC31.52■■■□□ 2.64
NKX2-3Q8TAU0 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
NKX2-3Q8TAU0 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC31.52■■■□□ 2.64
NKX2-3Q8TAU0 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.64
NKX2-3Q8TAU0 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.64
NKX2-3Q8TAU0 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC31.51■■■□□ 2.64
NKX2-3Q8TAU0 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC31.51■■■□□ 2.63
NKX2-3Q8TAU0 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
NKX2-3Q8TAU0 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
NKX2-3Q8TAU0 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC31.5■■■□□ 2.63
NKX2-3Q8TAU0 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC31.49■■■□□ 2.63
NKX2-3Q8TAU0 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC31.48■■■□□ 2.63
NKX2-3Q8TAU0 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
NKX2-3Q8TAU0 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC31.47■■■□□ 2.63
NKX2-3Q8TAU0 MIR4449-201ENST00000578365 66 ntBASIC31.46■■■□□ 2.63
NKX2-3Q8TAU0 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC31.46■■■□□ 2.63
NKX2-3Q8TAU0 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
NKX2-3Q8TAU0 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC31.45■■■□□ 2.63
NKX2-3Q8TAU0 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC31.44■■■□□ 2.62
NKX2-3Q8TAU0 HGH1-207ENST00000628266 258 ntTSL 5 BASIC31.44■■■□□ 2.62
Retrieved 100 of 98,524 protein–RNA pairs in 15.5 ms