Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC21.52■■□□□ 1.04
CLRN3Q8NCR9 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CLRN3Q8NCR9 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CLRN3Q8NCR9 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CLRN3Q8NCR9 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CLRN3Q8NCR9 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
CLRN3Q8NCR9 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CLRN3Q8NCR9 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
CLRN3Q8NCR9 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
CLRN3Q8NCR9 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CLRN3Q8NCR9 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
CLRN3Q8NCR9 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CLRN3Q8NCR9 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CLRN3Q8NCR9 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC21.48■■□□□ 1.03
CLRN3Q8NCR9 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
CLRN3Q8NCR9 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
CLRN3Q8NCR9 AL121749.1-202ENST00000609313 2153 ntBASIC21.48■■□□□ 1.03
CLRN3Q8NCR9 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CLRN3Q8NCR9 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CLRN3Q8NCR9 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC21.47■■□□□ 1.03
CLRN3Q8NCR9 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CLRN3Q8NCR9 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CLRN3Q8NCR9 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CLRN3Q8NCR9 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
CLRN3Q8NCR9 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
CLRN3Q8NCR9 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CLRN3Q8NCR9 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC21.45■■□□□ 1.02
CLRN3Q8NCR9 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CLRN3Q8NCR9 LTK-203ENST00000453182 2412 ntTSL 2 BASIC21.44■■□□□ 1.02
CLRN3Q8NCR9 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC21.43■■□□□ 1.02
CLRN3Q8NCR9 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CLRN3Q8NCR9 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CLRN3Q8NCR9 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
CLRN3Q8NCR9 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC21.42■■□□□ 1.02
CLRN3Q8NCR9 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC21.41■■□□□ 1.02
CLRN3Q8NCR9 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
CLRN3Q8NCR9 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.01
CLRN3Q8NCR9 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CLRN3Q8NCR9 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC21.37■■□□□ 1.01
CLRN3Q8NCR9 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
CLRN3Q8NCR9 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
CLRN3Q8NCR9 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CLRN3Q8NCR9 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CLRN3Q8NCR9 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC21.36■■□□□ 1.01
CLRN3Q8NCR9 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
CLRN3Q8NCR9 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CLRN3Q8NCR9 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CLRN3Q8NCR9 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC21.33■■□□□ 1.01
CLRN3Q8NCR9 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
CLRN3Q8NCR9 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
CLRN3Q8NCR9 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC21.32■■□□□ 1
CLRN3Q8NCR9 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC21.32■■□□□ 1
CLRN3Q8NCR9 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC21.32■■□□□ 1
CLRN3Q8NCR9 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC21.31■■□□□ 1
CLRN3Q8NCR9 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
CLRN3Q8NCR9 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
CLRN3Q8NCR9 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
CLRN3Q8NCR9 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
CLRN3Q8NCR9 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
CLRN3Q8NCR9 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC21.29■■□□□ 1
CLRN3Q8NCR9 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CLRN3Q8NCR9 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
CLRN3Q8NCR9 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC21.28■■□□□ 1
CLRN3Q8NCR9 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC21.28■■□□□ 1
CLRN3Q8NCR9 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC21.28■■□□□ 1
CLRN3Q8NCR9 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
CLRN3Q8NCR9 AC120057.4-201ENST00000624722 1615 ntBASIC21.27■■□□□ 1
CLRN3Q8NCR9 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CLRN3Q8NCR9 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CLRN3Q8NCR9 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CLRN3Q8NCR9 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
CLRN3Q8NCR9 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
CLRN3Q8NCR9 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CLRN3Q8NCR9 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
CLRN3Q8NCR9 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CLRN3Q8NCR9 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC21.24■□□□□ 0.99
CLRN3Q8NCR9 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC21.24■□□□□ 0.99
CLRN3Q8NCR9 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
CLRN3Q8NCR9 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CLRN3Q8NCR9 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC21.22■□□□□ 0.99
CLRN3Q8NCR9 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CLRN3Q8NCR9 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CLRN3Q8NCR9 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC21.22■□□□□ 0.99
CLRN3Q8NCR9 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CLRN3Q8NCR9 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
CLRN3Q8NCR9 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
CLRN3Q8NCR9 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC21.2■□□□□ 0.99
CLRN3Q8NCR9 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CLRN3Q8NCR9 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CLRN3Q8NCR9 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC21.2■□□□□ 0.98
CLRN3Q8NCR9 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC21.2■□□□□ 0.98
CLRN3Q8NCR9 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CLRN3Q8NCR9 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
CLRN3Q8NCR9 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CLRN3Q8NCR9 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
CLRN3Q8NCR9 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
CLRN3Q8NCR9 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CLRN3Q8NCR9 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC21.17■□□□□ 0.98
CLRN3Q8NCR9 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CLRN3Q8NCR9 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC21.17■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 87.6 ms