Protein–RNA interactions for Protein: Q8N8F7

LSMEM1, Leucine-rich single-pass membrane protein 1, humanhuman

Predictions only

Length 131 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSMEM1Q8N8F7 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC24.36■■□□□ 1.49
LSMEM1Q8N8F7 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC24.36■■□□□ 1.49
LSMEM1Q8N8F7 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC24.35■■□□□ 1.49
LSMEM1Q8N8F7 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
LSMEM1Q8N8F7 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
LSMEM1Q8N8F7 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC24.35■■□□□ 1.49
LSMEM1Q8N8F7 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
LSMEM1Q8N8F7 AL135925.1-201ENST00000605920 1701 ntBASIC24.33■■□□□ 1.49
LSMEM1Q8N8F7 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC24.33■■□□□ 1.49
LSMEM1Q8N8F7 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
LSMEM1Q8N8F7 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
LSMEM1Q8N8F7 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
LSMEM1Q8N8F7 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
LSMEM1Q8N8F7 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
LSMEM1Q8N8F7 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
LSMEM1Q8N8F7 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC24.32■■□□□ 1.48
LSMEM1Q8N8F7 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC24.31■■□□□ 1.48
LSMEM1Q8N8F7 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
LSMEM1Q8N8F7 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC24.31■■□□□ 1.48
LSMEM1Q8N8F7 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
LSMEM1Q8N8F7 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
LSMEM1Q8N8F7 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
LSMEM1Q8N8F7 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC24.29■■□□□ 1.48
LSMEM1Q8N8F7 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
LSMEM1Q8N8F7 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
LSMEM1Q8N8F7 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
LSMEM1Q8N8F7 ABCB10P3-201ENST00000561950 2166 ntBASIC24.27■■□□□ 1.48
LSMEM1Q8N8F7 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC24.27■■□□□ 1.48
LSMEM1Q8N8F7 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
LSMEM1Q8N8F7 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC24.27■■□□□ 1.48
LSMEM1Q8N8F7 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
LSMEM1Q8N8F7 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
LSMEM1Q8N8F7 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
LSMEM1Q8N8F7 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
LSMEM1Q8N8F7 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
LSMEM1Q8N8F7 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
LSMEM1Q8N8F7 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
LSMEM1Q8N8F7 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC24.24■■□□□ 1.47
LSMEM1Q8N8F7 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC24.23■■□□□ 1.47
LSMEM1Q8N8F7 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
LSMEM1Q8N8F7 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
LSMEM1Q8N8F7 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC24.23■■□□□ 1.47
LSMEM1Q8N8F7 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
LSMEM1Q8N8F7 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
LSMEM1Q8N8F7 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC24.22■■□□□ 1.47
LSMEM1Q8N8F7 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC24.22■■□□□ 1.47
LSMEM1Q8N8F7 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
LSMEM1Q8N8F7 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC24.2■■□□□ 1.47
LSMEM1Q8N8F7 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.47
LSMEM1Q8N8F7 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC24.2■■□□□ 1.46
LSMEM1Q8N8F7 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC24.19■■□□□ 1.46
LSMEM1Q8N8F7 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
LSMEM1Q8N8F7 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC24.18■■□□□ 1.46
LSMEM1Q8N8F7 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC24.17■■□□□ 1.46
LSMEM1Q8N8F7 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
LSMEM1Q8N8F7 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
LSMEM1Q8N8F7 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
LSMEM1Q8N8F7 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC24.17■■□□□ 1.46
LSMEM1Q8N8F7 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC24.16■■□□□ 1.46
LSMEM1Q8N8F7 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC24.15■■□□□ 1.46
LSMEM1Q8N8F7 AL391121.1-201ENST00000607967 1349 ntBASIC24.15■■□□□ 1.46
LSMEM1Q8N8F7 AC136428.2-201ENST00000563187 214 ntBASIC24.15■■□□□ 1.46
LSMEM1Q8N8F7 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
LSMEM1Q8N8F7 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
LSMEM1Q8N8F7 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC24.14■■□□□ 1.46
LSMEM1Q8N8F7 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
LSMEM1Q8N8F7 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
LSMEM1Q8N8F7 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC24.14■■□□□ 1.45
LSMEM1Q8N8F7 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC24.13■■□□□ 1.45
LSMEM1Q8N8F7 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
LSMEM1Q8N8F7 CAHM-201ENST00000604200 896 ntBASIC24.12■■□□□ 1.45
LSMEM1Q8N8F7 AC097358.2-201ENST00000607541 1159 ntBASIC24.12■■□□□ 1.45
LSMEM1Q8N8F7 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
LSMEM1Q8N8F7 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC24.12■■□□□ 1.45
LSMEM1Q8N8F7 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC24.11■■□□□ 1.45
LSMEM1Q8N8F7 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
LSMEM1Q8N8F7 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
LSMEM1Q8N8F7 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
LSMEM1Q8N8F7 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
LSMEM1Q8N8F7 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC24.1■■□□□ 1.45
LSMEM1Q8N8F7 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC24.1■■□□□ 1.45
LSMEM1Q8N8F7 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
LSMEM1Q8N8F7 EBPL-202ENST00000378268 680 ntTSL 3 BASIC24.1■■□□□ 1.45
LSMEM1Q8N8F7 DENR-202ENST00000455982 1052 ntTSL 5 BASIC24.1■■□□□ 1.45
LSMEM1Q8N8F7 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
LSMEM1Q8N8F7 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC24.1■■□□□ 1.45
LSMEM1Q8N8F7 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC24.09■■□□□ 1.45
LSMEM1Q8N8F7 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC24.09■■□□□ 1.45
LSMEM1Q8N8F7 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC24.08■■□□□ 1.45
LSMEM1Q8N8F7 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC24.08■■□□□ 1.44
LSMEM1Q8N8F7 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC24.07■■□□□ 1.44
LSMEM1Q8N8F7 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC24.07■■□□□ 1.44
LSMEM1Q8N8F7 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC24.07■■□□□ 1.44
LSMEM1Q8N8F7 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC24.07■■□□□ 1.44
LSMEM1Q8N8F7 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
LSMEM1Q8N8F7 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
LSMEM1Q8N8F7 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
LSMEM1Q8N8F7 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC24.06■■□□□ 1.44
LSMEM1Q8N8F7 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC24.06■■□□□ 1.44
LSMEM1Q8N8F7 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms