Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC26.2■■□□□ 1.79
VRK3Q8IV63 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
VRK3Q8IV63 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
VRK3Q8IV63 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
VRK3Q8IV63 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
VRK3Q8IV63 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC26.19■■□□□ 1.78
VRK3Q8IV63 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC26.18■■□□□ 1.78
VRK3Q8IV63 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC26.18■■□□□ 1.78
VRK3Q8IV63 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC26.18■■□□□ 1.78
VRK3Q8IV63 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC26.17■■□□□ 1.78
VRK3Q8IV63 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
VRK3Q8IV63 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC26.17■■□□□ 1.78
VRK3Q8IV63 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC26.16■■□□□ 1.78
VRK3Q8IV63 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
VRK3Q8IV63 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
VRK3Q8IV63 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
VRK3Q8IV63 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC26.14■■□□□ 1.77
VRK3Q8IV63 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
VRK3Q8IV63 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
VRK3Q8IV63 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC26.13■■□□□ 1.77
VRK3Q8IV63 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC26.12■■□□□ 1.77
VRK3Q8IV63 MIR762-201ENST00000390236 83 ntBASIC26.11■■□□□ 1.77
VRK3Q8IV63 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
VRK3Q8IV63 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC26.11■■□□□ 1.77
VRK3Q8IV63 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
VRK3Q8IV63 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
VRK3Q8IV63 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC26.1■■□□□ 1.77
VRK3Q8IV63 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
VRK3Q8IV63 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
VRK3Q8IV63 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
VRK3Q8IV63 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
VRK3Q8IV63 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC26.09■■□□□ 1.77
VRK3Q8IV63 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC26.08■■□□□ 1.77
VRK3Q8IV63 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC26.08■■□□□ 1.77
VRK3Q8IV63 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC26.08■■□□□ 1.77
VRK3Q8IV63 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
VRK3Q8IV63 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC26.07■■□□□ 1.76
VRK3Q8IV63 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
VRK3Q8IV63 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
VRK3Q8IV63 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
VRK3Q8IV63 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC26.06■■□□□ 1.76
VRK3Q8IV63 HNRNPLP2-201ENST00000568980 1570 ntBASIC26.06■■□□□ 1.76
VRK3Q8IV63 ABCB10P1-201ENST00000614297 2181 ntBASIC26.06■■□□□ 1.76
VRK3Q8IV63 CHML-205ENST00000638160 705 ntTSL 3 BASIC26.05■■□□□ 1.76
VRK3Q8IV63 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC26.04■■□□□ 1.76
VRK3Q8IV63 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC26.04■■□□□ 1.76
VRK3Q8IV63 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC26.04■■□□□ 1.76
VRK3Q8IV63 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC26.03■■□□□ 1.76
VRK3Q8IV63 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC26.03■■□□□ 1.76
VRK3Q8IV63 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
VRK3Q8IV63 AL135925.1-201ENST00000605920 1701 ntBASIC26.02■■□□□ 1.76
VRK3Q8IV63 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC26.02■■□□□ 1.76
VRK3Q8IV63 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
VRK3Q8IV63 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC26.01■■□□□ 1.75
VRK3Q8IV63 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC26■■□□□ 1.75
VRK3Q8IV63 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC26■■□□□ 1.75
VRK3Q8IV63 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC26■■□□□ 1.75
VRK3Q8IV63 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
VRK3Q8IV63 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC25.98■■□□□ 1.75
VRK3Q8IV63 ST7-AS1-201ENST00000456775 1889 ntBASIC25.98■■□□□ 1.75
VRK3Q8IV63 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
VRK3Q8IV63 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC25.97■■□□□ 1.75
VRK3Q8IV63 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC25.97■■□□□ 1.75
VRK3Q8IV63 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC25.95■■□□□ 1.75
VRK3Q8IV63 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC25.95■■□□□ 1.74
VRK3Q8IV63 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC25.95■■□□□ 1.74
VRK3Q8IV63 AC005559.1-201ENST00000589661 871 ntBASIC25.95■■□□□ 1.74
VRK3Q8IV63 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
VRK3Q8IV63 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
VRK3Q8IV63 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC25.94■■□□□ 1.74
VRK3Q8IV63 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
VRK3Q8IV63 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
VRK3Q8IV63 NRG1-221ENST00000614767 762 ntTSL 5 BASIC25.94■■□□□ 1.74
VRK3Q8IV63 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC25.94■■□□□ 1.74
VRK3Q8IV63 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC25.93■■□□□ 1.74
VRK3Q8IV63 DUX4L28-201ENST00000623687 678 ntBASIC25.93■■□□□ 1.74
VRK3Q8IV63 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC25.93■■□□□ 1.74
VRK3Q8IV63 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC25.92■■□□□ 1.74
VRK3Q8IV63 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC25.92■■□□□ 1.74
VRK3Q8IV63 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC25.91■■□□□ 1.74
VRK3Q8IV63 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
VRK3Q8IV63 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
VRK3Q8IV63 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
VRK3Q8IV63 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
VRK3Q8IV63 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC25.89■■□□□ 1.74
VRK3Q8IV63 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.73
VRK3Q8IV63 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
VRK3Q8IV63 AL162393.1-201ENST00000437852 946 ntBASIC25.88■■□□□ 1.73
VRK3Q8IV63 AC010864.1-201ENST00000609407 1511 ntBASIC25.88■■□□□ 1.73
VRK3Q8IV63 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
VRK3Q8IV63 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC25.87■■□□□ 1.73
VRK3Q8IV63 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC25.87■■□□□ 1.73
VRK3Q8IV63 AP006261.1-201ENST00000584783 668 ntBASIC25.87■■□□□ 1.73
VRK3Q8IV63 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
VRK3Q8IV63 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC25.86■■□□□ 1.73
VRK3Q8IV63 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
VRK3Q8IV63 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC25.86■■□□□ 1.73
VRK3Q8IV63 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC25.86■■□□□ 1.73
VRK3Q8IV63 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC25.84■■□□□ 1.73
VRK3Q8IV63 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC25.84■■□□□ 1.73
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms