Protein–RNA interactions for Protein: Q86VN1

VPS36, Vacuolar protein-sorting-associated protein 36, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS36Q86VN1 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
VPS36Q86VN1 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
VPS36Q86VN1 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC28.61■■■□□ 2.17
VPS36Q86VN1 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC28.61■■■□□ 2.17
VPS36Q86VN1 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC28.61■■■□□ 2.17
VPS36Q86VN1 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC28.6■■■□□ 2.17
VPS36Q86VN1 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
VPS36Q86VN1 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
VPS36Q86VN1 KLF16-203ENST00000592313 508 ntTSL 3 BASIC28.59■■■□□ 2.17
VPS36Q86VN1 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC28.59■■■□□ 2.17
VPS36Q86VN1 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
VPS36Q86VN1 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC28.58■■■□□ 2.17
VPS36Q86VN1 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC28.58■■■□□ 2.17
VPS36Q86VN1 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC28.58■■■□□ 2.17
VPS36Q86VN1 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
VPS36Q86VN1 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC28.57■■■□□ 2.16
VPS36Q86VN1 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
VPS36Q86VN1 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
VPS36Q86VN1 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC28.55■■■□□ 2.16
VPS36Q86VN1 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC28.55■■■□□ 2.16
VPS36Q86VN1 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC28.55■■■□□ 2.16
VPS36Q86VN1 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC28.55■■■□□ 2.16
VPS36Q86VN1 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
VPS36Q86VN1 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC28.54■■■□□ 2.16
VPS36Q86VN1 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
VPS36Q86VN1 AL135925.1-201ENST00000605920 1701 ntBASIC28.52■■■□□ 2.16
VPS36Q86VN1 WASH5P-204ENST00000632292 975 ntBASIC28.52■■■□□ 2.16
VPS36Q86VN1 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
VPS36Q86VN1 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC28.5■■■□□ 2.15
VPS36Q86VN1 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
VPS36Q86VN1 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
VPS36Q86VN1 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC28.48■■■□□ 2.15
VPS36Q86VN1 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC28.47■■■□□ 2.15
VPS36Q86VN1 AC139426.1-201ENST00000568218 2529 ntBASIC28.47■■■□□ 2.15
VPS36Q86VN1 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
VPS36Q86VN1 AL133380.1-201ENST00000506013 324 ntBASIC28.46■■■□□ 2.15
VPS36Q86VN1 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC28.45■■■□□ 2.15
VPS36Q86VN1 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC28.45■■■□□ 2.14
VPS36Q86VN1 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC28.44■■■□□ 2.14
VPS36Q86VN1 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC28.44■■■□□ 2.14
VPS36Q86VN1 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC28.43■■■□□ 2.14
VPS36Q86VN1 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC28.42■■■□□ 2.14
VPS36Q86VN1 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC28.42■■■□□ 2.14
VPS36Q86VN1 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC28.42■■■□□ 2.14
VPS36Q86VN1 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC28.41■■■□□ 2.14
VPS36Q86VN1 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
VPS36Q86VN1 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC28.4■■■□□ 2.14
VPS36Q86VN1 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC28.39■■■□□ 2.14
VPS36Q86VN1 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC28.39■■■□□ 2.14
VPS36Q86VN1 SHF-206ENST00000560471 2499 ntTSL 5 BASIC28.39■■■□□ 2.14
VPS36Q86VN1 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.13
VPS36Q86VN1 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC28.38■■■□□ 2.13
VPS36Q86VN1 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC28.38■■■□□ 2.13
VPS36Q86VN1 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC28.38■■■□□ 2.13
VPS36Q86VN1 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
VPS36Q86VN1 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
VPS36Q86VN1 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
VPS36Q86VN1 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC28.35■■■□□ 2.13
VPS36Q86VN1 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC28.35■■■□□ 2.13
VPS36Q86VN1 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC28.35■■■□□ 2.13
VPS36Q86VN1 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC28.34■■■□□ 2.13
VPS36Q86VN1 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC28.34■■■□□ 2.13
VPS36Q86VN1 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
VPS36Q86VN1 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
VPS36Q86VN1 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
VPS36Q86VN1 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
VPS36Q86VN1 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
VPS36Q86VN1 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC28.29■■■□□ 2.12
VPS36Q86VN1 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC28.29■■■□□ 2.12
VPS36Q86VN1 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
VPS36Q86VN1 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
VPS36Q86VN1 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC28.28■■■□□ 2.12
VPS36Q86VN1 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
VPS36Q86VN1 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC28.27■■■□□ 2.12
VPS36Q86VN1 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC28.27■■■□□ 2.12
VPS36Q86VN1 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
VPS36Q86VN1 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC28.26■■■□□ 2.11
VPS36Q86VN1 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC28.24■■■□□ 2.11
VPS36Q86VN1 RARRES2P7-201ENST00000567349 469 ntBASIC28.23■■■□□ 2.11
VPS36Q86VN1 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
VPS36Q86VN1 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC28.23■■■□□ 2.11
VPS36Q86VN1 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC28.21■■■□□ 2.11
VPS36Q86VN1 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
VPS36Q86VN1 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
VPS36Q86VN1 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
VPS36Q86VN1 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC28.19■■■□□ 2.1
VPS36Q86VN1 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
VPS36Q86VN1 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
VPS36Q86VN1 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
VPS36Q86VN1 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC28.18■■■□□ 2.1
VPS36Q86VN1 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
VPS36Q86VN1 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC28.17■■■□□ 2.1
VPS36Q86VN1 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
VPS36Q86VN1 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
VPS36Q86VN1 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC28.16■■■□□ 2.1
VPS36Q86VN1 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC28.16■■■□□ 2.1
VPS36Q86VN1 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
VPS36Q86VN1 SETD8P1-201ENST00000623146 1180 ntBASIC28.15■■■□□ 2.1
VPS36Q86VN1 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
VPS36Q86VN1 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
Retrieved 100 of 98,524 protein–RNA pairs in 12.5 ms