Protein–RNA interactions for Protein: P52945

PDX1, Pancreas/duodenum homeobox protein 1, humanhuman

Predictions only

Length 283 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDX1P52945 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
PDX1P52945 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC25.99■■□□□ 1.75
PDX1P52945 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
PDX1P52945 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
PDX1P52945 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC25.96■■□□□ 1.75
PDX1P52945 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
PDX1P52945 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC25.95■■□□□ 1.75
PDX1P52945 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
PDX1P52945 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
PDX1P52945 DUX4L29-201ENST00000425409 679 ntBASIC25.94■■□□□ 1.74
PDX1P52945 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
PDX1P52945 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC25.92■■□□□ 1.74
PDX1P52945 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC25.92■■□□□ 1.74
PDX1P52945 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC25.91■■□□□ 1.74
PDX1P52945 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
PDX1P52945 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC25.9■■□□□ 1.74
PDX1P52945 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC25.9■■□□□ 1.74
PDX1P52945 AC021231.2-201ENST00000594613 730 ntBASIC25.9■■□□□ 1.74
PDX1P52945 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC25.9■■□□□ 1.74
PDX1P52945 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC25.9■■□□□ 1.74
PDX1P52945 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC25.89■■□□□ 1.74
PDX1P52945 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC25.89■■□□□ 1.74
PDX1P52945 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC25.89■■□□□ 1.73
PDX1P52945 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC25.88■■□□□ 1.73
PDX1P52945 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
PDX1P52945 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
PDX1P52945 RPS2-202ENST00000526522 924 ntTSL 2 BASIC25.87■■□□□ 1.73
PDX1P52945 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
PDX1P52945 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
PDX1P52945 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
PDX1P52945 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC25.85■■□□□ 1.73
PDX1P52945 MIR6090-201ENST00000622481 60 ntBASIC25.84■■□□□ 1.73
PDX1P52945 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC25.84■■□□□ 1.73
PDX1P52945 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC25.83■■□□□ 1.72
PDX1P52945 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC25.82■■□□□ 1.72
PDX1P52945 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC25.81■■□□□ 1.72
PDX1P52945 CIB2-204ENST00000557846 934 ntTSL 3 BASIC25.81■■□□□ 1.72
PDX1P52945 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC25.81■■□□□ 1.72
PDX1P52945 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
PDX1P52945 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
PDX1P52945 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
PDX1P52945 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
PDX1P52945 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
PDX1P52945 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
PDX1P52945 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
PDX1P52945 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC25.79■■□□□ 1.72
PDX1P52945 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC25.79■■□□□ 1.72
PDX1P52945 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
PDX1P52945 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC25.78■■□□□ 1.72
PDX1P52945 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
PDX1P52945 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
PDX1P52945 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC25.77■■□□□ 1.72
PDX1P52945 MACF1-219ENST00000484793 834 ntTSL 2 BASIC25.77■■□□□ 1.72
PDX1P52945 AC108673.1-201ENST00000510422 1159 ntBASIC25.77■■□□□ 1.72
PDX1P52945 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
PDX1P52945 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
PDX1P52945 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
PDX1P52945 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
PDX1P52945 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
PDX1P52945 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC25.75■■□□□ 1.71
PDX1P52945 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC25.75■■□□□ 1.71
PDX1P52945 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
PDX1P52945 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC25.74■■□□□ 1.71
PDX1P52945 MIR4449-201ENST00000578365 66 ntBASIC25.74■■□□□ 1.71
PDX1P52945 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC25.74■■□□□ 1.71
PDX1P52945 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC25.73■■□□□ 1.71
PDX1P52945 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC25.73■■□□□ 1.71
PDX1P52945 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
PDX1P52945 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC25.73■■□□□ 1.71
PDX1P52945 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC25.73■■□□□ 1.71
PDX1P52945 MIR639-201ENST00000384974 98 ntBASIC25.72■■□□□ 1.71
PDX1P52945 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC25.72■■□□□ 1.71
PDX1P52945 ST7-205ENST00000393446 2114 ntTSL 5 BASIC25.72■■□□□ 1.71
PDX1P52945 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
PDX1P52945 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC25.71■■□□□ 1.71
PDX1P52945 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
PDX1P52945 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC25.7■■□□□ 1.7
PDX1P52945 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
PDX1P52945 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC25.69■■□□□ 1.7
PDX1P52945 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC25.69■■□□□ 1.7
PDX1P52945 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
PDX1P52945 RNF166-209ENST00000567844 633 ntTSL 5 BASIC25.69■■□□□ 1.7
PDX1P52945 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC25.68■■□□□ 1.7
PDX1P52945 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC25.68■■□□□ 1.7
PDX1P52945 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC25.68■■□□□ 1.7
PDX1P52945 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
PDX1P52945 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
PDX1P52945 MIR3648-2-201ENST00000581792 180 ntBASIC25.66■■□□□ 1.7
PDX1P52945 MIR3648-1-201ENST00000615959 180 ntBASIC25.66■■□□□ 1.7
PDX1P52945 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
PDX1P52945 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC25.65■■□□□ 1.7
PDX1P52945 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC25.65■■□□□ 1.7
PDX1P52945 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
PDX1P52945 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
PDX1P52945 AC016575.1-201ENST00000607026 382 ntBASIC25.64■■□□□ 1.7
PDX1P52945 GDI1-215ENST00000630693 786 ntTSL 4 BASIC25.63■■□□□ 1.69
PDX1P52945 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
PDX1P52945 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC25.63■■□□□ 1.69
PDX1P52945 ST7-202ENST00000323984 2142 ntTSL 5 BASIC25.62■■□□□ 1.69
PDX1P52945 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
Retrieved 100 of 98,524 protein–RNA pairs in 91.3 ms