Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
CXCL1P09341 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CXCL1P09341 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CXCL1P09341 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
CXCL1P09341 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CXCL1P09341 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CXCL1P09341 PKM-204ENST00000449901 2526 ntTSL 2 BASIC20.74■□□□□ 0.91
CXCL1P09341 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CXCL1P09341 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC20.73■□□□□ 0.91
CXCL1P09341 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CXCL1P09341 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CXCL1P09341 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CXCL1P09341 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CXCL1P09341 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CXCL1P09341 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC20.71■□□□□ 0.91
CXCL1P09341 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CXCL1P09341 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
CXCL1P09341 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CXCL1P09341 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CXCL1P09341 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CXCL1P09341 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC20.68■□□□□ 0.9
CXCL1P09341 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
CXCL1P09341 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CXCL1P09341 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CXCL1P09341 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC20.66■□□□□ 0.9
CXCL1P09341 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC20.65■□□□□ 0.9
CXCL1P09341 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CXCL1P09341 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CXCL1P09341 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC20.63■□□□□ 0.89
CXCL1P09341 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
CXCL1P09341 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CXCL1P09341 ST7-AS1-201ENST00000456775 1889 ntBASIC20.63■□□□□ 0.89
CXCL1P09341 INO80B-203ENST00000409917 796 ntTSL 2 BASIC20.63■□□□□ 0.89
CXCL1P09341 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
CXCL1P09341 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CXCL1P09341 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC20.62■□□□□ 0.89
CXCL1P09341 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
CXCL1P09341 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CXCL1P09341 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CXCL1P09341 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CXCL1P09341 AC015813.7-201ENST00000623294 581 ntBASIC20.61■□□□□ 0.89
CXCL1P09341 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC20.61■□□□□ 0.89
CXCL1P09341 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CXCL1P09341 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
CXCL1P09341 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CXCL1P09341 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CXCL1P09341 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
CXCL1P09341 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CXCL1P09341 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CXCL1P09341 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CXCL1P09341 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
CXCL1P09341 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CXCL1P09341 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
CXCL1P09341 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC20.56■□□□□ 0.88
CXCL1P09341 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC20.56■□□□□ 0.88
CXCL1P09341 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CXCL1P09341 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
CXCL1P09341 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CXCL1P09341 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CXCL1P09341 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CXCL1P09341 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
CXCL1P09341 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CXCL1P09341 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
CXCL1P09341 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
CXCL1P09341 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CXCL1P09341 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CXCL1P09341 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC20.53■□□□□ 0.88
CXCL1P09341 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CXCL1P09341 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC20.52■□□□□ 0.88
CXCL1P09341 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CXCL1P09341 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
CXCL1P09341 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
CXCL1P09341 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CXCL1P09341 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CXCL1P09341 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CXCL1P09341 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CXCL1P09341 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CXCL1P09341 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
CXCL1P09341 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
CXCL1P09341 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CXCL1P09341 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CXCL1P09341 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CXCL1P09341 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CXCL1P09341 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
CXCL1P09341 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CXCL1P09341 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CXCL1P09341 SNAI3-AS1-204ENST00000567997 2048 ntBASIC20.48■□□□□ 0.87
CXCL1P09341 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CXCL1P09341 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
CXCL1P09341 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CXCL1P09341 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CXCL1P09341 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
CXCL1P09341 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CXCL1P09341 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CXCL1P09341 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CXCL1P09341 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
CXCL1P09341 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CXCL1P09341 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CXCL1P09341 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CXCL1P09341 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC20.44■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 16.7 ms