Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
HLA-DQA1P01909 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
HLA-DQA1P01909 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HLA-DQA1P01909 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC20.06■□□□□ 0.8
HLA-DQA1P01909 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HLA-DQA1P01909 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
HLA-DQA1P01909 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
HLA-DQA1P01909 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HLA-DQA1P01909 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HLA-DQA1P01909 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HLA-DQA1P01909 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
HLA-DQA1P01909 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HLA-DQA1P01909 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
HLA-DQA1P01909 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HLA-DQA1P01909 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
HLA-DQA1P01909 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HLA-DQA1P01909 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
HLA-DQA1P01909 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
HLA-DQA1P01909 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC20.02■□□□□ 0.79
HLA-DQA1P01909 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
HLA-DQA1P01909 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.79
HLA-DQA1P01909 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC20.01■□□□□ 0.79
HLA-DQA1P01909 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HLA-DQA1P01909 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
HLA-DQA1P01909 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
HLA-DQA1P01909 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HLA-DQA1P01909 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
HLA-DQA1P01909 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
HLA-DQA1P01909 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
HLA-DQA1P01909 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC20■□□□□ 0.79
HLA-DQA1P01909 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HLA-DQA1P01909 SHF-207ENST00000560540 2062 ntTSL 5 BASIC19.99■□□□□ 0.79
HLA-DQA1P01909 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
HLA-DQA1P01909 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC19.98■□□□□ 0.79
HLA-DQA1P01909 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC19.98■□□□□ 0.79
HLA-DQA1P01909 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC19.97■□□□□ 0.79
HLA-DQA1P01909 INO80B-203ENST00000409917 796 ntTSL 2 BASIC19.97■□□□□ 0.79
HLA-DQA1P01909 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HLA-DQA1P01909 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
HLA-DQA1P01909 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
HLA-DQA1P01909 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC19.96■□□□□ 0.79
HLA-DQA1P01909 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HLA-DQA1P01909 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
HLA-DQA1P01909 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
HLA-DQA1P01909 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HLA-DQA1P01909 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
HLA-DQA1P01909 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC19.95■□□□□ 0.78
HLA-DQA1P01909 AL121749.1-202ENST00000609313 2153 ntBASIC19.95■□□□□ 0.78
HLA-DQA1P01909 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
HLA-DQA1P01909 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HLA-DQA1P01909 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
HLA-DQA1P01909 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
HLA-DQA1P01909 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
HLA-DQA1P01909 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
HLA-DQA1P01909 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HLA-DQA1P01909 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HLA-DQA1P01909 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
HLA-DQA1P01909 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HLA-DQA1P01909 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HLA-DQA1P01909 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HLA-DQA1P01909 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC19.91■□□□□ 0.78
HLA-DQA1P01909 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
HLA-DQA1P01909 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
HLA-DQA1P01909 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
HLA-DQA1P01909 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC19.88■□□□□ 0.77
HLA-DQA1P01909 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC19.87■□□□□ 0.77
HLA-DQA1P01909 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HLA-DQA1P01909 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HLA-DQA1P01909 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
HLA-DQA1P01909 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
HLA-DQA1P01909 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
HLA-DQA1P01909 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC19.85■□□□□ 0.77
HLA-DQA1P01909 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
HLA-DQA1P01909 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC19.85■□□□□ 0.77
HLA-DQA1P01909 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
HLA-DQA1P01909 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HLA-DQA1P01909 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HLA-DQA1P01909 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HLA-DQA1P01909 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
HLA-DQA1P01909 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
HLA-DQA1P01909 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HLA-DQA1P01909 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
HLA-DQA1P01909 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC19.81■□□□□ 0.76
HLA-DQA1P01909 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HLA-DQA1P01909 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
HLA-DQA1P01909 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC19.8■□□□□ 0.76
HLA-DQA1P01909 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
HLA-DQA1P01909 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC19.79■□□□□ 0.76
HLA-DQA1P01909 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HLA-DQA1P01909 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
HLA-DQA1P01909 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC19.79■□□□□ 0.76
HLA-DQA1P01909 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
HLA-DQA1P01909 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HLA-DQA1P01909 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
HLA-DQA1P01909 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
HLA-DQA1P01909 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
HLA-DQA1P01909 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC19.77■□□□□ 0.76
HLA-DQA1P01909 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HLA-DQA1P01909 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
HLA-DQA1P01909 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC19.76■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 12.8 ms