Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
CACNA1AO00555 AC018358.1-201ENST00000631079 1402 ntBASIC26.47■■□□□ 1.83
CACNA1AO00555 AL592295.1-201ENST00000400984 884 ntBASIC26.46■■□□□ 1.83
CACNA1AO00555 NTF6A-201ENST00000591175 560 ntBASIC26.46■■□□□ 1.83
CACNA1AO00555 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC26.46■■□□□ 1.83
CACNA1AO00555 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC26.44■■□□□ 1.82
CACNA1AO00555 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
CACNA1AO00555 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
CACNA1AO00555 MTURN-203ENST00000409688 843 ntTSL 2 BASIC26.42■■□□□ 1.82
CACNA1AO00555 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
CACNA1AO00555 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC26.4■■□□□ 1.82
CACNA1AO00555 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC26.4■■□□□ 1.82
CACNA1AO00555 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC26.39■■□□□ 1.81
CACNA1AO00555 METRNL-202ENST00000570778 967 ntTSL 5 BASIC26.38■■□□□ 1.81
CACNA1AO00555 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
CACNA1AO00555 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC26.36■■□□□ 1.81
CACNA1AO00555 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
CACNA1AO00555 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
CACNA1AO00555 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
CACNA1AO00555 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
CACNA1AO00555 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC26.36■■□□□ 1.81
CACNA1AO00555 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC26.36■■□□□ 1.81
CACNA1AO00555 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
CACNA1AO00555 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC26.35■■□□□ 1.81
CACNA1AO00555 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
CACNA1AO00555 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
CACNA1AO00555 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
CACNA1AO00555 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
CACNA1AO00555 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
CACNA1AO00555 GPX1-201ENST00000419349 1106 ntBASIC26.31■■□□□ 1.8
CACNA1AO00555 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC26.31■■□□□ 1.8
CACNA1AO00555 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
CACNA1AO00555 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
CACNA1AO00555 DUX4L13-201ENST00000554103 1267 ntBASIC26.3■■□□□ 1.8
CACNA1AO00555 DUX4L15-201ENST00000611059 1267 ntBASIC26.3■■□□□ 1.8
CACNA1AO00555 DUX4L23-201ENST00000615195 1269 ntBASIC26.3■■□□□ 1.8
CACNA1AO00555 DUX4L24-201ENST00000617576 1269 ntBASIC26.3■■□□□ 1.8
CACNA1AO00555 DUX4L22-201ENST00000618238 1269 ntBASIC26.3■■□□□ 1.8
CACNA1AO00555 DUX4L20-201ENST00000619712 1269 ntBASIC26.3■■□□□ 1.8
CACNA1AO00555 DUX4L21-201ENST00000622058 1269 ntBASIC26.3■■□□□ 1.8
CACNA1AO00555 DUX4L10-201ENST00000622460 1267 ntBASIC26.3■■□□□ 1.8
CACNA1AO00555 DUX4L25-201ENST00000624915 1269 ntBASIC26.3■■□□□ 1.8
CACNA1AO00555 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC26.3■■□□□ 1.8
CACNA1AO00555 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC26.29■■□□□ 1.8
CACNA1AO00555 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
CACNA1AO00555 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
CACNA1AO00555 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC26.26■■□□□ 1.79
CACNA1AO00555 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC26.26■■□□□ 1.79
CACNA1AO00555 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC26.25■■□□□ 1.79
CACNA1AO00555 AC108673.1-201ENST00000510422 1159 ntBASIC26.24■■□□□ 1.79
CACNA1AO00555 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC26.24■■□□□ 1.79
CACNA1AO00555 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC26.23■■□□□ 1.79
CACNA1AO00555 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC26.23■■□□□ 1.79
CACNA1AO00555 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
CACNA1AO00555 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
CACNA1AO00555 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC26.22■■□□□ 1.79
CACNA1AO00555 MIR6090-201ENST00000622481 60 ntBASIC26.22■■□□□ 1.79
CACNA1AO00555 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
CACNA1AO00555 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC26.2■■□□□ 1.78
CACNA1AO00555 AL033527.3-201ENST00000566366 1196 ntBASIC26.19■■□□□ 1.78
CACNA1AO00555 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC26.18■■□□□ 1.78
CACNA1AO00555 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
CACNA1AO00555 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC26.17■■□□□ 1.78
CACNA1AO00555 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
CACNA1AO00555 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
CACNA1AO00555 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC26.17■■□□□ 1.78
CACNA1AO00555 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC26.15■■□□□ 1.78
CACNA1AO00555 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
CACNA1AO00555 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
CACNA1AO00555 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
CACNA1AO00555 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
CACNA1AO00555 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
CACNA1AO00555 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC26.15■■□□□ 1.78
CACNA1AO00555 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC26.15■■□□□ 1.78
CACNA1AO00555 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC26.15■■□□□ 1.78
CACNA1AO00555 ILK-212ENST00000532063 1617 ntTSL 2 BASIC26.14■■□□□ 1.78
CACNA1AO00555 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC26.14■■□□□ 1.78
CACNA1AO00555 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC26.14■■□□□ 1.77
CACNA1AO00555 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
CACNA1AO00555 RARRES2P1-201ENST00000474487 481 ntBASIC26.13■■□□□ 1.77
CACNA1AO00555 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC26.13■■□□□ 1.77
CACNA1AO00555 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC26.12■■□□□ 1.77
CACNA1AO00555 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC26.12■■□□□ 1.77
CACNA1AO00555 HES6-205ENST00000409356 528 ntTSL 2 BASIC26.12■■□□□ 1.77
CACNA1AO00555 AC008813.1-201ENST00000536597 885 ntBASIC26.11■■□□□ 1.77
CACNA1AO00555 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC26.11■■□□□ 1.77
CACNA1AO00555 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC26.11■■□□□ 1.77
CACNA1AO00555 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC26.1■■□□□ 1.77
CACNA1AO00555 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC26.09■■□□□ 1.77
CACNA1AO00555 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC26.08■■□□□ 1.77
CACNA1AO00555 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
CACNA1AO00555 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC26.08■■□□□ 1.76
CACNA1AO00555 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC26.08■■□□□ 1.76
CACNA1AO00555 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
CACNA1AO00555 WASH5P-204ENST00000632292 975 ntBASIC26.07■■□□□ 1.76
CACNA1AO00555 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC26.07■■□□□ 1.76
CACNA1AO00555 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC26.07■■□□□ 1.76
CACNA1AO00555 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC26.07■■□□□ 1.76
CACNA1AO00555 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
CACNA1AO00555 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
Retrieved 100 of 98,524 protein–RNA pairs in 14.3 ms