Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC35.77■■■■□ 3.32
SENP3-EIF4A1A0A087X0R7 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC35.77■■■■□ 3.32
SENP3-EIF4A1A0A087X0R7 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC35.77■■■■□ 3.32
SENP3-EIF4A1A0A087X0R7 AC139426.1-201ENST00000568218 2529 ntBASIC35.76■■■■□ 3.32
SENP3-EIF4A1A0A087X0R7 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC35.75■■■■□ 3.31
SENP3-EIF4A1A0A087X0R7 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC35.75■■■■□ 3.31
SENP3-EIF4A1A0A087X0R7 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC35.74■■■■□ 3.31
SENP3-EIF4A1A0A087X0R7 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC35.74■■■■□ 3.31
SENP3-EIF4A1A0A087X0R7 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC35.74■■■■□ 3.31
SENP3-EIF4A1A0A087X0R7 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC35.74■■■■□ 3.31
SENP3-EIF4A1A0A087X0R7 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC35.73■■■■□ 3.31
SENP3-EIF4A1A0A087X0R7 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC35.72■■■■□ 3.31
SENP3-EIF4A1A0A087X0R7 WASH5P-204ENST00000632292 975 ntBASIC35.71■■■■□ 3.31
SENP3-EIF4A1A0A087X0R7 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC35.71■■■■□ 3.31
SENP3-EIF4A1A0A087X0R7 AP006261.1-201ENST00000584783 668 ntBASIC35.7■■■■□ 3.31
SENP3-EIF4A1A0A087X0R7 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC35.69■■■■□ 3.3
SENP3-EIF4A1A0A087X0R7 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC35.68■■■■□ 3.3
SENP3-EIF4A1A0A087X0R7 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC35.68■■■■□ 3.3
SENP3-EIF4A1A0A087X0R7 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC35.66■■■■□ 3.3
SENP3-EIF4A1A0A087X0R7 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC35.65■■■■□ 3.3
SENP3-EIF4A1A0A087X0R7 CAHM-201ENST00000604200 896 ntBASIC35.65■■■■□ 3.3
SENP3-EIF4A1A0A087X0R7 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC35.65■■■■□ 3.3
SENP3-EIF4A1A0A087X0R7 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC35.64■■■■□ 3.3
SENP3-EIF4A1A0A087X0R7 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC35.64■■■■□ 3.3
SENP3-EIF4A1A0A087X0R7 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC35.64■■■■□ 3.3
SENP3-EIF4A1A0A087X0R7 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC35.64■■■■□ 3.3
SENP3-EIF4A1A0A087X0R7 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC35.63■■■■□ 3.29
SENP3-EIF4A1A0A087X0R7 MLEC-202ENST00000412616 841 ntTSL 3 BASIC35.62■■■■□ 3.29
SENP3-EIF4A1A0A087X0R7 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC35.62■■■■□ 3.29
SENP3-EIF4A1A0A087X0R7 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC35.61■■■■□ 3.29
SENP3-EIF4A1A0A087X0R7 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC35.6■■■■□ 3.29
SENP3-EIF4A1A0A087X0R7 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC35.6■■■■□ 3.29
SENP3-EIF4A1A0A087X0R7 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC35.6■■■■□ 3.29
SENP3-EIF4A1A0A087X0R7 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC35.59■■■■□ 3.29
SENP3-EIF4A1A0A087X0R7 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC35.58■■■■□ 3.29
SENP3-EIF4A1A0A087X0R7 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC35.57■■■■□ 3.29
SENP3-EIF4A1A0A087X0R7 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC35.56■■■■□ 3.28
SENP3-EIF4A1A0A087X0R7 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC35.56■■■■□ 3.28
SENP3-EIF4A1A0A087X0R7 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC35.56■■■■□ 3.28
SENP3-EIF4A1A0A087X0R7 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC35.55■■■■□ 3.28
SENP3-EIF4A1A0A087X0R7 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC35.55■■■■□ 3.28
SENP3-EIF4A1A0A087X0R7 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC35.54■■■■□ 3.28
SENP3-EIF4A1A0A087X0R7 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC35.54■■■■□ 3.28
SENP3-EIF4A1A0A087X0R7 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC35.53■■■■□ 3.28
SENP3-EIF4A1A0A087X0R7 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC35.53■■■■□ 3.28
SENP3-EIF4A1A0A087X0R7 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC35.51■■■■□ 3.28
SENP3-EIF4A1A0A087X0R7 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC35.51■■■■□ 3.27
SENP3-EIF4A1A0A087X0R7 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC35.5■■■■□ 3.27
SENP3-EIF4A1A0A087X0R7 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC35.5■■■■□ 3.27
SENP3-EIF4A1A0A087X0R7 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC35.49■■■■□ 3.27
SENP3-EIF4A1A0A087X0R7 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC35.49■■■■□ 3.27
SENP3-EIF4A1A0A087X0R7 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC35.48■■■■□ 3.27
SENP3-EIF4A1A0A087X0R7 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC35.48■■■■□ 3.27
SENP3-EIF4A1A0A087X0R7 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC35.48■■■■□ 3.27
SENP3-EIF4A1A0A087X0R7 AL391121.1-201ENST00000607967 1349 ntBASIC35.48■■■■□ 3.27
SENP3-EIF4A1A0A087X0R7 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC35.46■■■■□ 3.27
SENP3-EIF4A1A0A087X0R7 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC35.46■■■■□ 3.27
SENP3-EIF4A1A0A087X0R7 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC35.46■■■■□ 3.27
SENP3-EIF4A1A0A087X0R7 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC35.46■■■■□ 3.27
SENP3-EIF4A1A0A087X0R7 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC35.45■■■■□ 3.27
SENP3-EIF4A1A0A087X0R7 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC35.44■■■■□ 3.26
SENP3-EIF4A1A0A087X0R7 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC35.44■■■■□ 3.26
SENP3-EIF4A1A0A087X0R7 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC35.44■■■■□ 3.26
SENP3-EIF4A1A0A087X0R7 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC35.43■■■■□ 3.26
SENP3-EIF4A1A0A087X0R7 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC35.43■■■■□ 3.26
SENP3-EIF4A1A0A087X0R7 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC35.42■■■■□ 3.26
SENP3-EIF4A1A0A087X0R7 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC35.42■■■■□ 3.26
SENP3-EIF4A1A0A087X0R7 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC35.42■■■■□ 3.26
SENP3-EIF4A1A0A087X0R7 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC35.42■■■■□ 3.26
SENP3-EIF4A1A0A087X0R7 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC35.42■■■■□ 3.26
SENP3-EIF4A1A0A087X0R7 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC35.41■■■■□ 3.26
SENP3-EIF4A1A0A087X0R7 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC35.4■■■■□ 3.26
SENP3-EIF4A1A0A087X0R7 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC35.4■■■■□ 3.26
SENP3-EIF4A1A0A087X0R7 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC35.4■■■■□ 3.26
SENP3-EIF4A1A0A087X0R7 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC35.39■■■■□ 3.26
SENP3-EIF4A1A0A087X0R7 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC35.38■■■■□ 3.26
SENP3-EIF4A1A0A087X0R7 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC35.38■■■■□ 3.25
SENP3-EIF4A1A0A087X0R7 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC35.38■■■■□ 3.25
SENP3-EIF4A1A0A087X0R7 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC35.38■■■■□ 3.25
SENP3-EIF4A1A0A087X0R7 ABCB10P3-201ENST00000561950 2166 ntBASIC35.37■■■■□ 3.25
SENP3-EIF4A1A0A087X0R7 ST7-AS1-201ENST00000456775 1889 ntBASIC35.37■■■■□ 3.25
SENP3-EIF4A1A0A087X0R7 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC35.36■■■■□ 3.25
SENP3-EIF4A1A0A087X0R7 SHF-206ENST00000560471 2499 ntTSL 5 BASIC35.35■■■■□ 3.25
SENP3-EIF4A1A0A087X0R7 EBPL-202ENST00000378268 680 ntTSL 3 BASIC35.35■■■■□ 3.25
SENP3-EIF4A1A0A087X0R7 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC35.35■■■■□ 3.25
SENP3-EIF4A1A0A087X0R7 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC35.33■■■■□ 3.25
SENP3-EIF4A1A0A087X0R7 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC35.33■■■■□ 3.25
SENP3-EIF4A1A0A087X0R7 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC35.32■■■■□ 3.24
SENP3-EIF4A1A0A087X0R7 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC35.3■■■■□ 3.24
SENP3-EIF4A1A0A087X0R7 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC35.3■■■■□ 3.24
SENP3-EIF4A1A0A087X0R7 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC35.29■■■■□ 3.24
SENP3-EIF4A1A0A087X0R7 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC35.29■■■■□ 3.24
SENP3-EIF4A1A0A087X0R7 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC35.29■■■■□ 3.24
SENP3-EIF4A1A0A087X0R7 AL135925.1-201ENST00000605920 1701 ntBASIC35.29■■■■□ 3.24
SENP3-EIF4A1A0A087X0R7 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC35.29■■■■□ 3.24
SENP3-EIF4A1A0A087X0R7 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC35.28■■■■□ 3.24
SENP3-EIF4A1A0A087X0R7 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC35.28■■■■□ 3.24
SENP3-EIF4A1A0A087X0R7 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC35.27■■■■□ 3.24
SENP3-EIF4A1A0A087X0R7 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC35.27■■■■□ 3.24
SENP3-EIF4A1A0A087X0R7 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC35.27■■■■□ 3.24
Retrieved 100 of 98,524 protein–RNA pairs in 67.9 ms