Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 AL139246.5-201ENST00000606645 996 ntBASIC18.74■□□□□ 0.59
VSX1Q9NZR4 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VSX1Q9NZR4 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
VSX1Q9NZR4 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
VSX1Q9NZR4 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
VSX1Q9NZR4 MPST-204ENST00000404393 1329 ntTSL 5 BASIC18.74■□□□□ 0.59
VSX1Q9NZR4 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
VSX1Q9NZR4 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
VSX1Q9NZR4 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
VSX1Q9NZR4 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC18.73■□□□□ 0.59
VSX1Q9NZR4 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
VSX1Q9NZR4 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
VSX1Q9NZR4 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC18.73■□□□□ 0.59
VSX1Q9NZR4 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC18.73■□□□□ 0.59
VSX1Q9NZR4 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC18.73■□□□□ 0.59
VSX1Q9NZR4 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC18.73■□□□□ 0.59
VSX1Q9NZR4 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VSX1Q9NZR4 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
VSX1Q9NZR4 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
VSX1Q9NZR4 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VSX1Q9NZR4 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VSX1Q9NZR4 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VSX1Q9NZR4 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VSX1Q9NZR4 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
VSX1Q9NZR4 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
VSX1Q9NZR4 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
VSX1Q9NZR4 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
VSX1Q9NZR4 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VSX1Q9NZR4 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
VSX1Q9NZR4 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC18.72■□□□□ 0.59
VSX1Q9NZR4 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC18.72■□□□□ 0.59
VSX1Q9NZR4 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VSX1Q9NZR4 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC18.72■□□□□ 0.59
VSX1Q9NZR4 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
VSX1Q9NZR4 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC18.72■□□□□ 0.59
VSX1Q9NZR4 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VSX1Q9NZR4 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VSX1Q9NZR4 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC18.72■□□□□ 0.59
VSX1Q9NZR4 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
VSX1Q9NZR4 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
VSX1Q9NZR4 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC18.72■□□□□ 0.59
VSX1Q9NZR4 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
VSX1Q9NZR4 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VSX1Q9NZR4 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
VSX1Q9NZR4 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VSX1Q9NZR4 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC18.71■□□□□ 0.59
VSX1Q9NZR4 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VSX1Q9NZR4 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
VSX1Q9NZR4 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
VSX1Q9NZR4 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC18.71■□□□□ 0.59
VSX1Q9NZR4 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
VSX1Q9NZR4 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC18.71■□□□□ 0.59
VSX1Q9NZR4 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC18.71■□□□□ 0.59
VSX1Q9NZR4 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VSX1Q9NZR4 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
VSX1Q9NZR4 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VSX1Q9NZR4 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VSX1Q9NZR4 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC18.7■□□□□ 0.58
VSX1Q9NZR4 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC18.7■□□□□ 0.58
VSX1Q9NZR4 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC18.7■□□□□ 0.58
VSX1Q9NZR4 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VSX1Q9NZR4 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VSX1Q9NZR4 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC18.7■□□□□ 0.58
VSX1Q9NZR4 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
VSX1Q9NZR4 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
VSX1Q9NZR4 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VSX1Q9NZR4 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VSX1Q9NZR4 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC18.7■□□□□ 0.58
VSX1Q9NZR4 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VSX1Q9NZR4 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC18.7■□□□□ 0.58
VSX1Q9NZR4 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC18.7■□□□□ 0.58
VSX1Q9NZR4 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VSX1Q9NZR4 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
VSX1Q9NZR4 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
VSX1Q9NZR4 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VSX1Q9NZR4 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VSX1Q9NZR4 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC18.7■□□□□ 0.58
VSX1Q9NZR4 PALM-207ENST00000590161 2137 ntTSL 4 BASIC18.7■□□□□ 0.58
VSX1Q9NZR4 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
VSX1Q9NZR4 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
VSX1Q9NZR4 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VSX1Q9NZR4 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
VSX1Q9NZR4 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VSX1Q9NZR4 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
VSX1Q9NZR4 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VSX1Q9NZR4 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
VSX1Q9NZR4 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
VSX1Q9NZR4 RARG-204ENST00000543726 1779 ntTSL 2 BASIC18.69■□□□□ 0.58
VSX1Q9NZR4 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VSX1Q9NZR4 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VSX1Q9NZR4 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
VSX1Q9NZR4 RNF146-206ENST00000480444 843 ntTSL 2 BASIC18.69■□□□□ 0.58
VSX1Q9NZR4 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC18.69■□□□□ 0.58
VSX1Q9NZR4 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC18.69■□□□□ 0.58
VSX1Q9NZR4 AL354811.1-201ENST00000610286 706 ntBASIC18.69■□□□□ 0.58
VSX1Q9NZR4 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC18.69■□□□□ 0.58
VSX1Q9NZR4 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VSX1Q9NZR4 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
VSX1Q9NZR4 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
VSX1Q9NZR4 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms