Protein–RNA interactions for Protein: Q9NP77

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, humanhuman

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72Q9NP77 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC20.89■□□□□ 0.93
SSU72Q9NP77 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
SSU72Q9NP77 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SSU72Q9NP77 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC20.88■□□□□ 0.93
SSU72Q9NP77 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SSU72Q9NP77 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SSU72Q9NP77 AL162377.1-201ENST00000618844 1793 ntBASIC20.88■□□□□ 0.93
SSU72Q9NP77 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
SSU72Q9NP77 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SSU72Q9NP77 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC20.88■□□□□ 0.93
SSU72Q9NP77 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC20.88■□□□□ 0.93
SSU72Q9NP77 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC20.88■□□□□ 0.93
SSU72Q9NP77 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC20.88■□□□□ 0.93
SSU72Q9NP77 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC20.88■□□□□ 0.93
SSU72Q9NP77 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
SSU72Q9NP77 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
SSU72Q9NP77 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC20.88■□□□□ 0.93
SSU72Q9NP77 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC20.88■□□□□ 0.93
SSU72Q9NP77 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC20.88■□□□□ 0.93
SSU72Q9NP77 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC20.87■□□□□ 0.93
SSU72Q9NP77 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
SSU72Q9NP77 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SSU72Q9NP77 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC20.87■□□□□ 0.93
SSU72Q9NP77 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC20.87■□□□□ 0.93
SSU72Q9NP77 ME2-218ENST00000640965 2476 ntTSL 5 BASIC20.87■□□□□ 0.93
SSU72Q9NP77 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SSU72Q9NP77 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
SSU72Q9NP77 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
SSU72Q9NP77 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
SSU72Q9NP77 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SSU72Q9NP77 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SSU72Q9NP77 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SSU72Q9NP77 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SSU72Q9NP77 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC20.87■□□□□ 0.93
SSU72Q9NP77 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SSU72Q9NP77 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SSU72Q9NP77 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC20.86■□□□□ 0.93
SSU72Q9NP77 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC20.86■□□□□ 0.93
SSU72Q9NP77 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC20.86■□□□□ 0.93
SSU72Q9NP77 AP005435.1-201ENST00000529293 1178 ntBASIC20.86■□□□□ 0.93
SSU72Q9NP77 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC20.86■□□□□ 0.93
SSU72Q9NP77 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC20.86■□□□□ 0.93
SSU72Q9NP77 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SSU72Q9NP77 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SSU72Q9NP77 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SSU72Q9NP77 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SSU72Q9NP77 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
SSU72Q9NP77 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC20.86■□□□□ 0.93
SSU72Q9NP77 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
SSU72Q9NP77 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
SSU72Q9NP77 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC20.86■□□□□ 0.93
SSU72Q9NP77 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC20.85■□□□□ 0.93
SSU72Q9NP77 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC20.85■□□□□ 0.93
SSU72Q9NP77 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC20.85■□□□□ 0.93
SSU72Q9NP77 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SSU72Q9NP77 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SSU72Q9NP77 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
SSU72Q9NP77 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
SSU72Q9NP77 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SSU72Q9NP77 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC20.85■□□□□ 0.93
SSU72Q9NP77 AC092171.4-201ENST00000609130 632 ntBASIC20.85■□□□□ 0.93
SSU72Q9NP77 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC20.85■□□□□ 0.93
SSU72Q9NP77 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC20.85■□□□□ 0.93
SSU72Q9NP77 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
SSU72Q9NP77 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SSU72Q9NP77 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
SSU72Q9NP77 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SSU72Q9NP77 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
SSU72Q9NP77 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC20.85■□□□□ 0.93
SSU72Q9NP77 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC20.84■□□□□ 0.93
SSU72Q9NP77 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC20.84■□□□□ 0.93
SSU72Q9NP77 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC20.84■□□□□ 0.93
SSU72Q9NP77 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SSU72Q9NP77 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SSU72Q9NP77 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
SSU72Q9NP77 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SSU72Q9NP77 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
SSU72Q9NP77 AK3-203ENST00000447596 705 ntTSL 2 BASIC20.84■□□□□ 0.93
SSU72Q9NP77 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC20.84■□□□□ 0.93
SSU72Q9NP77 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
SSU72Q9NP77 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC20.84■□□□□ 0.93
SSU72Q9NP77 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
SSU72Q9NP77 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
SSU72Q9NP77 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC20.84■□□□□ 0.93
SSU72Q9NP77 BID-203ENST00000399765 1879 ntTSL 2 BASIC20.84■□□□□ 0.93
SSU72Q9NP77 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SSU72Q9NP77 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC20.83■□□□□ 0.93
SSU72Q9NP77 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
SSU72Q9NP77 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SSU72Q9NP77 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
SSU72Q9NP77 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SSU72Q9NP77 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
SSU72Q9NP77 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SSU72Q9NP77 UNC93B8-201ENST00000511903 705 ntBASIC20.83■□□□□ 0.93
SSU72Q9NP77 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SSU72Q9NP77 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
SSU72Q9NP77 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
SSU72Q9NP77 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
SSU72Q9NP77 DET1-207ENST00000564406 2315 ntTSL 2 BASIC20.83■□□□□ 0.92
SSU72Q9NP77 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC20.83■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms