Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
SMC1BQ8NDV3 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC25.19■■□□□ 1.62
SMC1BQ8NDV3 NME3-204ENST00000563498 920 ntTSL 2 BASIC25.19■■□□□ 1.62
SMC1BQ8NDV3 AC100791.3-201ENST00000617619 330 ntBASIC25.19■■□□□ 1.62
SMC1BQ8NDV3 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
SMC1BQ8NDV3 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC25.18■■□□□ 1.62
SMC1BQ8NDV3 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC25.18■■□□□ 1.62
SMC1BQ8NDV3 AC133681.1-201ENST00000465482 601 ntBASIC25.18■■□□□ 1.62
SMC1BQ8NDV3 HES2-205ENST00000487437 968 ntTSL 3 BASIC25.18■■□□□ 1.62
SMC1BQ8NDV3 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC25.18■■□□□ 1.62
SMC1BQ8NDV3 AC079089.2-201ENST00000531211 1277 ntBASIC25.18■■□□□ 1.62
SMC1BQ8NDV3 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC25.18■■□□□ 1.62
SMC1BQ8NDV3 AC124016.1-201ENST00000609552 612 ntBASIC25.18■■□□□ 1.62
SMC1BQ8NDV3 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
SMC1BQ8NDV3 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC25.18■■□□□ 1.62
SMC1BQ8NDV3 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC25.17■■□□□ 1.62
SMC1BQ8NDV3 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
SMC1BQ8NDV3 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
SMC1BQ8NDV3 MFF-205ENST00000354503 1085 ntTSL 2 BASIC25.17■■□□□ 1.62
SMC1BQ8NDV3 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
SMC1BQ8NDV3 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC25.17■■□□□ 1.62
SMC1BQ8NDV3 LY6E-205ENST00000519611 635 ntTSL 3 BASIC25.17■■□□□ 1.62
SMC1BQ8NDV3 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC25.17■■□□□ 1.62
SMC1BQ8NDV3 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC25.17■■□□□ 1.62
SMC1BQ8NDV3 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC25.17■■□□□ 1.62
SMC1BQ8NDV3 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
SMC1BQ8NDV3 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
SMC1BQ8NDV3 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
SMC1BQ8NDV3 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC25.16■■□□□ 1.62
SMC1BQ8NDV3 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
SMC1BQ8NDV3 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC25.16■■□□□ 1.62
SMC1BQ8NDV3 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC25.16■■□□□ 1.62
SMC1BQ8NDV3 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC25.16■■□□□ 1.62
SMC1BQ8NDV3 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC25.16■■□□□ 1.62
SMC1BQ8NDV3 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC25.16■■□□□ 1.62
SMC1BQ8NDV3 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC25.16■■□□□ 1.62
SMC1BQ8NDV3 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
SMC1BQ8NDV3 AL034346.1-201ENST00000568244 1277 ntBASIC25.16■■□□□ 1.62
SMC1BQ8NDV3 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
SMC1BQ8NDV3 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC25.16■■□□□ 1.62
SMC1BQ8NDV3 LINC00543-201ENST00000567234 1845 ntBASIC25.16■■□□□ 1.62
SMC1BQ8NDV3 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
SMC1BQ8NDV3 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
SMC1BQ8NDV3 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
SMC1BQ8NDV3 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
SMC1BQ8NDV3 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
SMC1BQ8NDV3 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC25.15■■□□□ 1.62
SMC1BQ8NDV3 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC25.15■■□□□ 1.62
SMC1BQ8NDV3 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
SMC1BQ8NDV3 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC25.15■■□□□ 1.62
SMC1BQ8NDV3 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
SMC1BQ8NDV3 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
SMC1BQ8NDV3 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
SMC1BQ8NDV3 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
SMC1BQ8NDV3 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
SMC1BQ8NDV3 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC25.15■■□□□ 1.62
SMC1BQ8NDV3 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC25.15■■□□□ 1.62
SMC1BQ8NDV3 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
SMC1BQ8NDV3 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC25.15■■□□□ 1.62
SMC1BQ8NDV3 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
SMC1BQ8NDV3 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC25.15■■□□□ 1.62
SMC1BQ8NDV3 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
SMC1BQ8NDV3 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC25.15■■□□□ 1.62
SMC1BQ8NDV3 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
SMC1BQ8NDV3 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
SMC1BQ8NDV3 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
SMC1BQ8NDV3 AP003733.4-201ENST00000623785 1697 ntBASIC25.14■■□□□ 1.62
SMC1BQ8NDV3 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC25.14■■□□□ 1.62
SMC1BQ8NDV3 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC25.14■■□□□ 1.62
SMC1BQ8NDV3 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
SMC1BQ8NDV3 SERF2-207ENST00000409614 582 ntTSL 2 BASIC25.14■■□□□ 1.62
SMC1BQ8NDV3 PENK-204ENST00000518770 863 ntTSL 2 BASIC25.14■■□□□ 1.62
SMC1BQ8NDV3 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC25.14■■□□□ 1.62
SMC1BQ8NDV3 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC25.14■■□□□ 1.62
SMC1BQ8NDV3 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC25.14■■□□□ 1.62
SMC1BQ8NDV3 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
SMC1BQ8NDV3 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
SMC1BQ8NDV3 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
SMC1BQ8NDV3 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
SMC1BQ8NDV3 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC25.13■■□□□ 1.61
SMC1BQ8NDV3 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC25.13■■□□□ 1.61
SMC1BQ8NDV3 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC25.13■■□□□ 1.61
SMC1BQ8NDV3 MTDHP1-201ENST00000605323 784 ntBASIC25.13■■□□□ 1.61
SMC1BQ8NDV3 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
SMC1BQ8NDV3 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
SMC1BQ8NDV3 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC25.12■■□□□ 1.61
SMC1BQ8NDV3 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC25.12■■□□□ 1.61
SMC1BQ8NDV3 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
SMC1BQ8NDV3 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
SMC1BQ8NDV3 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
SMC1BQ8NDV3 MMP23A-201ENST00000234610 1017 ntBASIC25.12■■□□□ 1.61
SMC1BQ8NDV3 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
SMC1BQ8NDV3 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
SMC1BQ8NDV3 FAM21FP-204ENST00000608637 956 ntBASIC25.12■■□□□ 1.61
SMC1BQ8NDV3 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC25.12■■□□□ 1.61
SMC1BQ8NDV3 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC25.12■■□□□ 1.61
SMC1BQ8NDV3 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
SMC1BQ8NDV3 AP006587.3-201ENST00000525742 1516 ntBASIC25.12■■□□□ 1.61
SMC1BQ8NDV3 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC25.11■■□□□ 1.61
SMC1BQ8NDV3 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms