Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 FEM1AP4-201ENST00000443167 1987 ntBASIC20.61■□□□□ 0.89
VRK3Q8IV63 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC20.61■□□□□ 0.89
VRK3Q8IV63 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
VRK3Q8IV63 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
VRK3Q8IV63 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
VRK3Q8IV63 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
VRK3Q8IV63 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
VRK3Q8IV63 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
VRK3Q8IV63 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC20.6■□□□□ 0.89
VRK3Q8IV63 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
VRK3Q8IV63 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
VRK3Q8IV63 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC20.6■□□□□ 0.89
VRK3Q8IV63 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC20.6■□□□□ 0.89
VRK3Q8IV63 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC20.6■□□□□ 0.89
VRK3Q8IV63 AC010141.2-201ENST00000452426 721 ntBASIC20.6■□□□□ 0.89
VRK3Q8IV63 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
VRK3Q8IV63 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC20.6■□□□□ 0.89
VRK3Q8IV63 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC20.6■□□□□ 0.89
VRK3Q8IV63 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
VRK3Q8IV63 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC20.6■□□□□ 0.89
VRK3Q8IV63 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC20.6■□□□□ 0.89
VRK3Q8IV63 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
VRK3Q8IV63 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC20.6■□□□□ 0.89
VRK3Q8IV63 PALM-207ENST00000590161 2137 ntTSL 4 BASIC20.6■□□□□ 0.89
VRK3Q8IV63 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
VRK3Q8IV63 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
VRK3Q8IV63 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
VRK3Q8IV63 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
VRK3Q8IV63 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC20.6■□□□□ 0.89
VRK3Q8IV63 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VRK3Q8IV63 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC20.59■□□□□ 0.89
VRK3Q8IV63 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VRK3Q8IV63 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VRK3Q8IV63 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
VRK3Q8IV63 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC20.59■□□□□ 0.89
VRK3Q8IV63 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC20.59■□□□□ 0.89
VRK3Q8IV63 AC005229.4-201ENST00000610085 2198 ntBASIC20.59■□□□□ 0.89
VRK3Q8IV63 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VRK3Q8IV63 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VRK3Q8IV63 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VRK3Q8IV63 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
VRK3Q8IV63 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
VRK3Q8IV63 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
VRK3Q8IV63 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.89
VRK3Q8IV63 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
VRK3Q8IV63 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
VRK3Q8IV63 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
VRK3Q8IV63 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
VRK3Q8IV63 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC20.58■□□□□ 0.88
VRK3Q8IV63 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
VRK3Q8IV63 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
VRK3Q8IV63 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
VRK3Q8IV63 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
VRK3Q8IV63 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC20.58■□□□□ 0.88
VRK3Q8IV63 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC20.57■□□□□ 0.88
VRK3Q8IV63 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC20.57■□□□□ 0.88
VRK3Q8IV63 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VRK3Q8IV63 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
VRK3Q8IV63 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VRK3Q8IV63 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC20.57■□□□□ 0.88
VRK3Q8IV63 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VRK3Q8IV63 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC20.57■□□□□ 0.88
VRK3Q8IV63 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VRK3Q8IV63 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC20.57■□□□□ 0.88
VRK3Q8IV63 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC20.57■□□□□ 0.88
VRK3Q8IV63 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC20.57■□□□□ 0.88
VRK3Q8IV63 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
VRK3Q8IV63 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
VRK3Q8IV63 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC20.56■□□□□ 0.88
VRK3Q8IV63 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
VRK3Q8IV63 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC20.56■□□□□ 0.88
VRK3Q8IV63 KRT19P1-201ENST00000405746 1186 ntBASIC20.56■□□□□ 0.88
VRK3Q8IV63 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC20.56■□□□□ 0.88
VRK3Q8IV63 SLC7A5P2-201ENST00000553010 536 ntBASIC20.56■□□□□ 0.88
VRK3Q8IV63 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
VRK3Q8IV63 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
VRK3Q8IV63 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
VRK3Q8IV63 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
VRK3Q8IV63 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
VRK3Q8IV63 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC20.56■□□□□ 0.88
VRK3Q8IV63 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
VRK3Q8IV63 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
VRK3Q8IV63 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
VRK3Q8IV63 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
VRK3Q8IV63 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC20.56■□□□□ 0.88
VRK3Q8IV63 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
VRK3Q8IV63 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
VRK3Q8IV63 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
VRK3Q8IV63 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
VRK3Q8IV63 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC20.55■□□□□ 0.88
VRK3Q8IV63 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
VRK3Q8IV63 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
VRK3Q8IV63 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC20.55■□□□□ 0.88
VRK3Q8IV63 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
VRK3Q8IV63 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
VRK3Q8IV63 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VRK3Q8IV63 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
VRK3Q8IV63 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
VRK3Q8IV63 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
VRK3Q8IV63 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms