Protein–RNA interactions for Protein: P62857

RPS28, 40S ribosomal protein S28, humanhuman

Known RBP Predictions only

Length 69 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28P62857 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
RPS28P62857 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC12.33□□□□□ -0.44
RPS28P62857 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC12.33□□□□□ -0.44
RPS28P62857 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
RPS28P62857 PCDHAC2-203ENST00000615316 3011 ntBASIC12.33□□□□□ -0.44
RPS28P62857 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
RPS28P62857 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
RPS28P62857 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
RPS28P62857 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC12.33□□□□□ -0.44
RPS28P62857 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
RPS28P62857 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
RPS28P62857 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
RPS28P62857 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
RPS28P62857 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
RPS28P62857 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
RPS28P62857 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
RPS28P62857 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
RPS28P62857 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC12.33□□□□□ -0.44
RPS28P62857 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
RPS28P62857 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
RPS28P62857 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
RPS28P62857 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
RPS28P62857 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC12.32□□□□□ -0.44
RPS28P62857 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
RPS28P62857 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
RPS28P62857 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
RPS28P62857 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
RPS28P62857 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
RPS28P62857 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC12.32□□□□□ -0.44
RPS28P62857 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC12.32□□□□□ -0.44
RPS28P62857 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
RPS28P62857 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC12.32□□□□□ -0.44
RPS28P62857 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC12.32□□□□□ -0.44
RPS28P62857 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
RPS28P62857 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC12.32□□□□□ -0.44
RPS28P62857 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC12.32□□□□□ -0.44
RPS28P62857 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
RPS28P62857 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC12.32□□□□□ -0.44
RPS28P62857 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
RPS28P62857 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC12.32□□□□□ -0.44
RPS28P62857 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
RPS28P62857 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
RPS28P62857 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
RPS28P62857 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
RPS28P62857 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC12.32□□□□□ -0.44
RPS28P62857 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
RPS28P62857 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
RPS28P62857 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC12.32□□□□□ -0.44
RPS28P62857 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
RPS28P62857 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC12.31□□□□□ -0.44
RPS28P62857 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC12.31□□□□□ -0.44
RPS28P62857 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
RPS28P62857 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC12.31□□□□□ -0.44
RPS28P62857 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
RPS28P62857 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
RPS28P62857 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC12.31□□□□□ -0.44
RPS28P62857 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
RPS28P62857 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
RPS28P62857 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
RPS28P62857 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
RPS28P62857 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC12.31□□□□□ -0.44
RPS28P62857 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC12.31□□□□□ -0.44
RPS28P62857 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC12.31□□□□□ -0.44
RPS28P62857 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
RPS28P62857 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
RPS28P62857 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
RPS28P62857 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
RPS28P62857 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC12.31□□□□□ -0.44
RPS28P62857 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
RPS28P62857 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
RPS28P62857 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
RPS28P62857 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
RPS28P62857 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
RPS28P62857 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
RPS28P62857 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
RPS28P62857 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC12.31□□□□□ -0.44
RPS28P62857 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
RPS28P62857 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
RPS28P62857 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
RPS28P62857 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
RPS28P62857 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
RPS28P62857 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
RPS28P62857 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
RPS28P62857 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
RPS28P62857 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC12.3□□□□□ -0.44
RPS28P62857 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
RPS28P62857 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
RPS28P62857 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
RPS28P62857 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC12.3□□□□□ -0.44
RPS28P62857 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC12.3□□□□□ -0.44
RPS28P62857 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
RPS28P62857 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
RPS28P62857 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
RPS28P62857 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
RPS28P62857 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
RPS28P62857 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
RPS28P62857 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
RPS28P62857 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
RPS28P62857 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC12.3□□□□□ -0.44
RPS28P62857 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC12.3□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 61.8 ms