Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC20.56■□□□□ 0.88
PKNOX1P55347 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
PKNOX1P55347 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PKNOX1P55347 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC20.56■□□□□ 0.88
PKNOX1P55347 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC20.56■□□□□ 0.88
PKNOX1P55347 LINC01006-201ENST00000333319 2292 ntBASIC20.56■□□□□ 0.88
PKNOX1P55347 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC20.56■□□□□ 0.88
PKNOX1P55347 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC20.56■□□□□ 0.88
PKNOX1P55347 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC20.55■□□□□ 0.88
PKNOX1P55347 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PKNOX1P55347 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
PKNOX1P55347 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PKNOX1P55347 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PKNOX1P55347 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PKNOX1P55347 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PKNOX1P55347 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PKNOX1P55347 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
PKNOX1P55347 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PKNOX1P55347 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PKNOX1P55347 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PKNOX1P55347 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC20.55■□□□□ 0.88
PKNOX1P55347 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PKNOX1P55347 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC20.54■□□□□ 0.88
PKNOX1P55347 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PKNOX1P55347 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
PKNOX1P55347 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
PKNOX1P55347 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PKNOX1P55347 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PKNOX1P55347 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PKNOX1P55347 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PKNOX1P55347 AL136162.1-201ENST00000607711 1078 ntBASIC20.54■□□□□ 0.88
PKNOX1P55347 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
PKNOX1P55347 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PKNOX1P55347 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
PKNOX1P55347 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC20.54■□□□□ 0.88
PKNOX1P55347 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC20.54■□□□□ 0.88
PKNOX1P55347 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
PKNOX1P55347 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC20.54■□□□□ 0.88
PKNOX1P55347 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC20.54■□□□□ 0.88
PKNOX1P55347 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PKNOX1P55347 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PKNOX1P55347 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC20.54■□□□□ 0.88
PKNOX1P55347 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
PKNOX1P55347 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PKNOX1P55347 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PKNOX1P55347 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PKNOX1P55347 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PKNOX1P55347 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC20.53■□□□□ 0.88
PKNOX1P55347 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
PKNOX1P55347 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PKNOX1P55347 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PKNOX1P55347 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC20.53■□□□□ 0.88
PKNOX1P55347 AC024257.2-201ENST00000549699 147 ntBASIC20.53■□□□□ 0.88
PKNOX1P55347 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC20.53■□□□□ 0.88
PKNOX1P55347 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC20.53■□□□□ 0.88
PKNOX1P55347 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PKNOX1P55347 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PKNOX1P55347 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PKNOX1P55347 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
PKNOX1P55347 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PKNOX1P55347 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PKNOX1P55347 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PKNOX1P55347 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PKNOX1P55347 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
PKNOX1P55347 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC20.52■□□□□ 0.88
PKNOX1P55347 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC20.52■□□□□ 0.88
PKNOX1P55347 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC20.52■□□□□ 0.88
PKNOX1P55347 AL049796.1-201ENST00000565336 1766 ntBASIC20.52■□□□□ 0.88
PKNOX1P55347 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
PKNOX1P55347 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
PKNOX1P55347 IGHV3-19-201ENST00000521488 291 ntBASIC20.52■□□□□ 0.88
PKNOX1P55347 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
PKNOX1P55347 AC126544.1-201ENST00000580842 1059 ntBASIC20.52■□□□□ 0.88
PKNOX1P55347 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
PKNOX1P55347 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
PKNOX1P55347 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.87
PKNOX1P55347 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC20.52■□□□□ 0.87
PKNOX1P55347 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
PKNOX1P55347 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
PKNOX1P55347 AC135279.3-201ENST00000610945 1311 ntBASIC20.52■□□□□ 0.87
PKNOX1P55347 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
PKNOX1P55347 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
PKNOX1P55347 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
PKNOX1P55347 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
PKNOX1P55347 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PKNOX1P55347 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC20.51■□□□□ 0.87
PKNOX1P55347 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
PKNOX1P55347 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
PKNOX1P55347 AICDA-202ENST00000537228 667 ntTSL 5 BASIC20.51■□□□□ 0.87
PKNOX1P55347 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC20.51■□□□□ 0.87
PKNOX1P55347 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC20.51■□□□□ 0.87
PKNOX1P55347 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PKNOX1P55347 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
PKNOX1P55347 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
PKNOX1P55347 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC20.51■□□□□ 0.87
PKNOX1P55347 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PKNOX1P55347 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PKNOX1P55347 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PKNOX1P55347 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PKNOX1P55347 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms