Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
FOXA3P55318 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
FOXA3P55318 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
FOXA3P55318 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC15.74■□□□□ 0.11
FOXA3P55318 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC15.74■□□□□ 0.11
FOXA3P55318 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC15.74■□□□□ 0.11
FOXA3P55318 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
FOXA3P55318 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
FOXA3P55318 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
FOXA3P55318 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC15.74■□□□□ 0.11
FOXA3P55318 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
FOXA3P55318 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
FOXA3P55318 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC15.73■□□□□ 0.11
FOXA3P55318 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC15.73■□□□□ 0.11
FOXA3P55318 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
FOXA3P55318 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
FOXA3P55318 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC15.73■□□□□ 0.11
FOXA3P55318 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC15.73■□□□□ 0.11
FOXA3P55318 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
FOXA3P55318 TK2-202ENST00000417693 1046 ntTSL 2 BASIC15.73■□□□□ 0.11
FOXA3P55318 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
FOXA3P55318 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
FOXA3P55318 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
FOXA3P55318 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
FOXA3P55318 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
FOXA3P55318 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
FOXA3P55318 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
FOXA3P55318 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC15.72■□□□□ 0.11
FOXA3P55318 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
FOXA3P55318 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
FOXA3P55318 AL020996.1-203ENST00000536896 2307 ntBASIC15.72■□□□□ 0.11
FOXA3P55318 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
FOXA3P55318 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC15.72■□□□□ 0.11
FOXA3P55318 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
FOXA3P55318 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
FOXA3P55318 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
FOXA3P55318 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
FOXA3P55318 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC15.72■□□□□ 0.11
FOXA3P55318 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
FOXA3P55318 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
FOXA3P55318 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC15.72■□□□□ 0.11
FOXA3P55318 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
FOXA3P55318 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
FOXA3P55318 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
FOXA3P55318 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC15.72■□□□□ 0.11
FOXA3P55318 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
FOXA3P55318 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
FOXA3P55318 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
FOXA3P55318 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
FOXA3P55318 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
FOXA3P55318 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
FOXA3P55318 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
FOXA3P55318 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
FOXA3P55318 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
FOXA3P55318 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
FOXA3P55318 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
FOXA3P55318 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
FOXA3P55318 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
FOXA3P55318 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
FOXA3P55318 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
FOXA3P55318 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
FOXA3P55318 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC15.71■□□□□ 0.11
FOXA3P55318 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
FOXA3P55318 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC15.71■□□□□ 0.11
FOXA3P55318 MBP-237ENST00000579129 1052 ntTSL 5 BASIC15.71■□□□□ 0.11
FOXA3P55318 PVT1_1.1-201ENST00000615125 194 ntBASIC15.71■□□□□ 0.11
FOXA3P55318 AC074183.2-201ENST00000623112 922 ntBASIC15.71■□□□□ 0.11
FOXA3P55318 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
FOXA3P55318 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
FOXA3P55318 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
FOXA3P55318 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
FOXA3P55318 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
FOXA3P55318 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.1
FOXA3P55318 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC15.71■□□□□ 0.1
FOXA3P55318 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
FOXA3P55318 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.1
FOXA3P55318 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
FOXA3P55318 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
FOXA3P55318 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
FOXA3P55318 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
FOXA3P55318 AC006128.1-201ENST00000624704 1661 ntBASIC15.7■□□□□ 0.1
FOXA3P55318 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC15.7■□□□□ 0.1
FOXA3P55318 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
FOXA3P55318 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
FOXA3P55318 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
FOXA3P55318 ME2-218ENST00000640965 2476 ntTSL 5 BASIC15.7■□□□□ 0.1
FOXA3P55318 EI24-211ENST00000534546 1544 ntTSL 2 BASIC15.7■□□□□ 0.1
FOXA3P55318 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
FOXA3P55318 AC073314.1-201ENST00000568729 2216 ntBASIC15.7■□□□□ 0.1
FOXA3P55318 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
FOXA3P55318 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC15.7■□□□□ 0.1
FOXA3P55318 AL031602.1-201ENST00000633169 911 ntBASIC15.7■□□□□ 0.1
FOXA3P55318 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
FOXA3P55318 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC15.7■□□□□ 0.1
FOXA3P55318 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC15.7■□□□□ 0.1
FOXA3P55318 AIRN-201ENST00000601203 4374 ntBASIC15.7■□□□□ 0.1
FOXA3P55318 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC15.7■□□□□ 0.1
FOXA3P55318 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
FOXA3P55318 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
FOXA3P55318 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms