Protein–RNA interactions for Protein: P43246

MSH2, DNA mismatch repair protein Msh2, humanhuman

Predictions only

Length 934 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2P43246 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
MSH2P43246 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
MSH2P43246 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC21.31■■□□□ 1
MSH2P43246 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC21.31■■□□□ 1
MSH2P43246 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
MSH2P43246 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC21.31■■□□□ 1
MSH2P43246 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
MSH2P43246 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC21.3■■□□□ 1
MSH2P43246 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC21.3■■□□□ 1
MSH2P43246 SRD5A1P1-201ENST00000442297 786 ntBASIC21.3■■□□□ 1
MSH2P43246 RASSF1-AS1-201ENST00000629828 790 ntBASIC21.3■■□□□ 1
MSH2P43246 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
MSH2P43246 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
MSH2P43246 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
MSH2P43246 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
MSH2P43246 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
MSH2P43246 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC21.29■■□□□ 1
MSH2P43246 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC21.29■■□□□ 1
MSH2P43246 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC21.29■■□□□ 1
MSH2P43246 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
MSH2P43246 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC21.29■■□□□ 1
MSH2P43246 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC21.29■■□□□ 1
MSH2P43246 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
MSH2P43246 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC21.29■■□□□ 1
MSH2P43246 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
MSH2P43246 SRR-208ENST00000576848 588 ntTSL 4 BASIC21.29■■□□□ 1
MSH2P43246 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC21.29■■□□□ 1
MSH2P43246 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC21.29■■□□□ 1
MSH2P43246 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC21.29■■□□□ 1
MSH2P43246 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC21.29■■□□□ 1
MSH2P43246 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC21.28■■□□□ 1
MSH2P43246 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
MSH2P43246 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
MSH2P43246 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC21.28■■□□□ 1
MSH2P43246 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
MSH2P43246 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC21.28■■□□□ 1
MSH2P43246 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC21.28■■□□□ 1
MSH2P43246 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC21.28■■□□□ 1
MSH2P43246 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
MSH2P43246 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
MSH2P43246 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
MSH2P43246 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC21.27■■□□□ 1
MSH2P43246 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC21.27■■□□□ 1
MSH2P43246 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
MSH2P43246 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
MSH2P43246 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC21.27■■□□□ 1
MSH2P43246 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
MSH2P43246 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC21.27■■□□□ 1
MSH2P43246 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC21.27■■□□□ 1
MSH2P43246 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC21.27■■□□□ 1
MSH2P43246 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
MSH2P43246 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
MSH2P43246 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
MSH2P43246 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
MSH2P43246 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
MSH2P43246 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
MSH2P43246 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
MSH2P43246 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
MSH2P43246 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
MSH2P43246 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
MSH2P43246 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
MSH2P43246 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
MSH2P43246 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC21.26■□□□□ 0.99
MSH2P43246 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
MSH2P43246 QDPR-206ENST00000508623 601 ntTSL 3 BASIC21.26■□□□□ 0.99
MSH2P43246 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC21.26■□□□□ 0.99
MSH2P43246 TRIR-202ENST00000588213 841 ntTSL 3 BASIC21.26■□□□□ 0.99
MSH2P43246 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC21.26■□□□□ 0.99
MSH2P43246 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC21.26■□□□□ 0.99
MSH2P43246 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC21.26■□□□□ 0.99
MSH2P43246 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
MSH2P43246 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
MSH2P43246 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
MSH2P43246 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC21.26■□□□□ 0.99
MSH2P43246 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC21.26■□□□□ 0.99
MSH2P43246 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
MSH2P43246 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
MSH2P43246 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC21.25■□□□□ 0.99
MSH2P43246 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC21.25■□□□□ 0.99
MSH2P43246 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
MSH2P43246 RPP21-222ENST00000433076 577 ntTSL 2 BASIC21.25■□□□□ 0.99
MSH2P43246 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC21.25■□□□□ 0.99
MSH2P43246 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
MSH2P43246 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC21.25■□□□□ 0.99
MSH2P43246 AL512631.2-201ENST00000604634 923 ntBASIC21.25■□□□□ 0.99
MSH2P43246 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC21.25■□□□□ 0.99
MSH2P43246 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
MSH2P43246 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
MSH2P43246 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
MSH2P43246 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
MSH2P43246 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
MSH2P43246 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
MSH2P43246 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC21.24■□□□□ 0.99
MSH2P43246 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
MSH2P43246 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
MSH2P43246 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
MSH2P43246 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
MSH2P43246 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
MSH2P43246 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
MSH2P43246 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC21.24■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms