Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
PTPN4P29074 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC20.99■□□□□ 0.95
PTPN4P29074 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
PTPN4P29074 FEM1AP1-201ENST00000431297 1995 ntBASIC20.99■□□□□ 0.95
PTPN4P29074 ADM-207ENST00000530439 1839 ntTSL 2 BASIC20.99■□□□□ 0.95
PTPN4P29074 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC20.99■□□□□ 0.95
PTPN4P29074 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PTPN4P29074 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
PTPN4P29074 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
PTPN4P29074 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
PTPN4P29074 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
PTPN4P29074 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC20.98■□□□□ 0.95
PTPN4P29074 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
PTPN4P29074 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC20.98■□□□□ 0.95
PTPN4P29074 IGHV3-19-201ENST00000521488 291 ntBASIC20.98■□□□□ 0.95
PTPN4P29074 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC20.98■□□□□ 0.95
PTPN4P29074 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC20.98■□□□□ 0.95
PTPN4P29074 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PTPN4P29074 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
PTPN4P29074 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PTPN4P29074 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC20.98■□□□□ 0.95
PTPN4P29074 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PTPN4P29074 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
PTPN4P29074 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC20.98■□□□□ 0.95
PTPN4P29074 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PTPN4P29074 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PTPN4P29074 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
PTPN4P29074 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC20.97■□□□□ 0.95
PTPN4P29074 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
PTPN4P29074 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
PTPN4P29074 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PTPN4P29074 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
PTPN4P29074 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
PTPN4P29074 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC20.97■□□□□ 0.95
PTPN4P29074 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC20.97■□□□□ 0.95
PTPN4P29074 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
PTPN4P29074 AC034268.1-201ENST00000441047 882 ntBASIC20.97■□□□□ 0.95
PTPN4P29074 YBX1P1-201ENST00000445822 960 ntBASIC20.97■□□□□ 0.95
PTPN4P29074 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC20.97■□□□□ 0.95
PTPN4P29074 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC20.97■□□□□ 0.95
PTPN4P29074 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
PTPN4P29074 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
PTPN4P29074 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
PTPN4P29074 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
PTPN4P29074 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
PTPN4P29074 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PTPN4P29074 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PTPN4P29074 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
PTPN4P29074 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC20.96■□□□□ 0.95
PTPN4P29074 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PTPN4P29074 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
PTPN4P29074 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PTPN4P29074 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
PTPN4P29074 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PTPN4P29074 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
PTPN4P29074 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC20.96■□□□□ 0.95
PTPN4P29074 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
PTPN4P29074 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PTPN4P29074 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
PTPN4P29074 DUX4L4-201ENST00000566884 1269 ntBASIC20.96■□□□□ 0.95
PTPN4P29074 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC20.96■□□□□ 0.95
PTPN4P29074 AL358852.1-201ENST00000623174 1268 ntBASIC20.96■□□□□ 0.95
PTPN4P29074 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC20.96■□□□□ 0.95
PTPN4P29074 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
PTPN4P29074 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC20.96■□□□□ 0.95
PTPN4P29074 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC20.96■□□□□ 0.95
PTPN4P29074 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
PTPN4P29074 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC20.96■□□□□ 0.95
PTPN4P29074 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC20.96■□□□□ 0.95
PTPN4P29074 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC20.96■□□□□ 0.95
PTPN4P29074 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
PTPN4P29074 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
PTPN4P29074 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC20.95■□□□□ 0.94
PTPN4P29074 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC20.95■□□□□ 0.94
PTPN4P29074 RARG-204ENST00000543726 1779 ntTSL 2 BASIC20.95■□□□□ 0.94
PTPN4P29074 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PTPN4P29074 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
PTPN4P29074 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
PTPN4P29074 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PTPN4P29074 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PTPN4P29074 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC20.95■□□□□ 0.94
PTPN4P29074 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
PTPN4P29074 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC20.95■□□□□ 0.94
PTPN4P29074 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PTPN4P29074 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
PTPN4P29074 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PTPN4P29074 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
PTPN4P29074 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PTPN4P29074 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
PTPN4P29074 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
PTPN4P29074 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PTPN4P29074 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PTPN4P29074 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
PTPN4P29074 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PTPN4P29074 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
PTPN4P29074 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC20.94■□□□□ 0.94
PTPN4P29074 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC20.94■□□□□ 0.94
PTPN4P29074 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PTPN4P29074 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC20.94■□□□□ 0.94
PTPN4P29074 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 71.4 ms