Protein–RNA interactions for Protein: O60508

CDC40, Pre-mRNA-processing factor 17, humanhuman

Known RBP eCLIP

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC40O60508 HNRNPA2B1-202ENST00000356674 1711 ntAPPRIS P3 TSL 1 (best) BASIC10.8□□□□□ -0.684e-16■□□□□ 9.3
CDC40O60508 HNRNPA2B1-208ENST00000618183 3539 ntTSL 5 BASIC10.06□□□□□ -0.84e-16■□□□□ 9.3
CDC40O60508 HNRNPA2B1-201ENST00000354667 3664 ntAPPRIS ALT1 TSL 1 (best) BASIC7.56□□□□□ -1.24e-16■□□□□ 9.3
CDC40O60508 HUWE1-210ENST00000474971 598 ntTSL 22.43□□□□□ -2.022e-8■□□□□ 9.3
CDC40O60508 HNRNPU-229ENST00000640440 871 ntTSL 313.35□□□□□ -0.273e-6■□□□□ 9.2
CDC40O60508 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC16.1■□□□□ 0.173e-11■□□□□ 9.2
CDC40O60508 CTTN-212ENST00000527962 587 ntTSL 214.74□□□□□ -0.053e-11■□□□□ 9.2
CDC40O60508 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.183e-11■□□□□ 9.2
CDC40O60508 CTTN-201ENST00000301843 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.453e-11■□□□□ 9.2
CDC40O60508 CTTN-208ENST00000498223 523 ntTSL 310.44□□□□□ -0.743e-11■□□□□ 9.2
CDC40O60508 CTTN-207ENST00000483662 736 ntTSL 26.26□□□□□ -1.413e-11■□□□□ 9.2
CDC40O60508 SRSF2-210ENST00000589919 595 ntTSL 25.88□□□□□ -1.472e-14■□□□□ 9.2
CDC40O60508 HSP90AA1-203ENST00000553585 581 ntTSL 35.44□□□□□ -1.543e-7■□□□□ 9.2
CDC40O60508 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.143e-8■□□□□ 9.2
CDC40O60508 GNL3-203ENST00000460073 583 ntTSL 413.44□□□□□ -0.263e-8■□□□□ 9.2
CDC40O60508 GNL3-205ENST00000468146 533 ntTSL 49.36□□□□□ -0.913e-8■□□□□ 9.2
CDC40O60508 GNL3-204ENST00000462550 597 ntTSL 27.42□□□□□ -1.223e-8■□□□□ 9.2
CDC40O60508 RPS12-202ENST00000484616 639 ntTSL 23.41□□□□□ -1.863e-8■□□□□ 9.2
CDC40O60508 GNL3-208ENST00000479230 547 ntTSL 42.79□□□□□ -1.963e-8■□□□□ 9.2
CDC40O60508 TAF1D-204ENST00000525928 1710 ntTSL 26.46□□□□□ -1.383e-7■□□□□ 9.2
CDC40O60508 TAF1D-222ENST00000546088 1728 ntTSL 35.91□□□□□ -1.463e-7■□□□□ 9.2
CDC40O60508 TAF1D-210ENST00000529435 1011 ntTSL 55.02□□□□□ -1.613e-7■□□□□ 9.2
CDC40O60508 TAF1D-215ENST00000530769 4358 ntTSL 24.46□□□□□ -1.73e-7■□□□□ 9.2
CDC40O60508 TAF1D-202ENST00000393259 547 ntTSL 32.68□□□□□ -1.983e-7■□□□□ 9.2
CDC40O60508 TAF1D-214ENST00000530089 1429 ntTSL 32.67□□□□□ -1.983e-7■□□□□ 9.2
CDC40O60508 TAF1D-219ENST00000534079 656 ntTSL 22.19□□□□□ -2.063e-7■□□□□ 9.2
CDC40O60508 TAF1D-221ENST00000540232 483 ntTSL 32.05□□□□□ -2.083e-7■□□□□ 9.2
CDC40O60508 TAF1D-213ENST00000529900 1066 ntTSL 21.85□□□□□ -2.113e-7■□□□□ 9.2
CDC40O60508 SRSF2-206ENST00000582449 1518 ntTSL 217.39■□□□□ 0.378e-15■□□□□ 9.2
CDC40O60508 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.368e-15■□□□□ 9.2
CDC40O60508 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC15.75■□□□□ 0.118e-15■□□□□ 9.2
CDC40O60508 SRSF2-204ENST00000452355 1357 ntTSL 514.71□□□□□ -0.068e-15■□□□□ 9.2
CDC40O60508 SRSF2-208ENST00000585202 1359 ntTSL 313.54□□□□□ -0.248e-15■□□□□ 9.2
CDC40O60508 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.288e-15■□□□□ 9.2
CDC40O60508 SRSF2-211ENST00000592676 559 ntTSL 35.01□□□□□ -1.611e-26■□□□□ 9.2
CDC40O60508 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC19.6■□□□□ 0.739e-6■□□□□ 9.1
CDC40O60508 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC18.84■□□□□ 0.619e-6■□□□□ 9.1
CDC40O60508 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.329e-6■□□□□ 9.1
CDC40O60508 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC16.85■□□□□ 0.299e-6■□□□□ 9.1
CDC40O60508 ACSF2-212ENST00000507769 595 ntTSL 316.28■□□□□ 0.29e-6■□□□□ 9.1
CDC40O60508 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.119e-6■□□□□ 9.1
CDC40O60508 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.089e-6■□□□□ 9.1
CDC40O60508 RPS17-210ENST00000561440 1922 ntTSL 215.41■□□□□ 0.069e-6■□□□□ 9.1
CDC40O60508 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.059e-6■□□□□ 9.1
CDC40O60508 HM13-219ENST00000487964 902 ntTSL 514.91□□□□□ -0.029e-6■□□□□ 9.1
CDC40O60508 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC14.81□□□□□ -0.049e-6■□□□□ 9.1
CDC40O60508 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.079e-6■□□□□ 9.1
CDC40O60508 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.079e-6■□□□□ 9.1
CDC40O60508 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC14.51□□□□□ -0.099e-6■□□□□ 9.1
CDC40O60508 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.119e-6■□□□□ 9.1
CDC40O60508 HM13-220ENST00000492709 1248 ntTSL 514.12□□□□□ -0.159e-6■□□□□ 9.1
CDC40O60508 HM13-213ENST00000469126 756 ntTSL 513.92□□□□□ -0.189e-6■□□□□ 9.1
CDC40O60508 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.29e-6■□□□□ 9.1
CDC40O60508 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC13.76□□□□□ -0.219e-6■□□□□ 9.1
CDC40O60508 HAL-206ENST00000546999 2271 ntTSL 1 (best)13.65□□□□□ -0.229e-6■□□□□ 9.1
CDC40O60508 C16orf58-210ENST00000568491 2422 ntTSL 213.58□□□□□ -0.249e-6■□□□□ 9.1
CDC40O60508 GRB7-213ENST00000584819 1146 ntTSL 213.31□□□□□ -0.289e-6■□□□□ 9.1
CDC40O60508 HM13-222ENST00000494153 757 ntTSL 513.11□□□□□ -0.319e-6■□□□□ 9.1
CDC40O60508 HM13-206ENST00000460389 1075 ntTSL 512.98□□□□□ -0.339e-6■□□□□ 9.1
CDC40O60508 HM13-205ENST00000460225 443 ntTSL 512.79□□□□□ -0.369e-6■□□□□ 9.1
CDC40O60508 PRPF8-202ENST00000571346 865 ntTSL 212.69□□□□□ -0.389e-6■□□□□ 9.1
CDC40O60508 HM13-203ENST00000344042 847 ntTSL 512.68□□□□□ -0.389e-6■□□□□ 9.1
CDC40O60508 RPS17-205ENST00000560229 776 ntTSL 1 (best)12.65□□□□□ -0.389e-6■□□□□ 9.1
CDC40O60508 ADGRD1-201ENST00000261654 5168 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.399e-6■□□□□ 9.1
CDC40O60508 DAZAP1-208ENST00000589874 3642 nt12.62□□□□□ -0.399e-6■□□□□ 9.1
CDC40O60508 GRB7-210ENST00000578702 630 ntTSL 312.36□□□□□ -0.439e-6■□□□□ 9.1
CDC40O60508 HAL-202ENST00000538703 2637 ntTSL 2 BASIC12.35□□□□□ -0.439e-6■□□□□ 9.1
CDC40O60508 IST1-203ENST00000378799 4843 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.449e-6■□□□□ 9.1
CDC40O60508 ADGRD1-214ENST00000543826 708 ntTSL 312.26□□□□□ -0.459e-6■□□□□ 9.1
CDC40O60508 OGFR-202ENST00000370461 4506 ntAPPRIS ALT2 TSL 2 BASIC12.13□□□□□ -0.479e-6■□□□□ 9.1
CDC40O60508 DAZAP1-203ENST00000585485 3943 ntTSL 211.8□□□□□ -0.529e-6■□□□□ 9.1
CDC40O60508 ARHGAP12-203ENST00000375245 4958 ntTSL 1 (best) BASIC11.72□□□□□ -0.539e-6■□□□□ 9.1
CDC40O60508 HAL-204ENST00000544080 2804 ntTSL 211.61□□□□□ -0.559e-6■□□□□ 9.1
CDC40O60508 ADGRD1-210ENST00000541143 7085 ntTSL 211.54□□□□□ -0.569e-6■□□□□ 9.1
CDC40O60508 IST1-221ENST00000544564 1500 ntAPPRIS P1 TSL 2 BASIC11.49□□□□□ -0.579e-6■□□□□ 9.1
CDC40O60508 IST1-219ENST00000541571 1962 ntAPPRIS P1 TSL 2 BASIC11.36□□□□□ -0.599e-6■□□□□ 9.1
CDC40O60508 HM13-217ENST00000483310 755 ntTSL 311.31□□□□□ -0.69e-6■□□□□ 9.1
CDC40O60508 ARHGAP12-205ENST00000396144 5084 ntAPPRIS ALT1 TSL 1 (best) BASIC11.29□□□□□ -0.69e-6■□□□□ 9.1
CDC40O60508 IST1-205ENST00000439924 1841 ntTSL 511□□□□□ -0.659e-6■□□□□ 9.1
CDC40O60508 IST1-223ENST00000545518 710 ntTSL 210.97□□□□□ -0.659e-6■□□□□ 9.1
CDC40O60508 HM13-212ENST00000469097 801 ntTSL 510.79□□□□□ -0.689e-6■□□□□ 9.1
CDC40O60508 HM13-209ENST00000464661 906 ntTSL 310.76□□□□□ -0.699e-6■□□□□ 9.1
CDC40O60508 ACSF2-216ENST00000509806 706 ntTSL 310.66□□□□□ -0.79e-6■□□□□ 9.1
CDC40O60508 IST1-215ENST00000538850 1125 ntTSL 3 BASIC10.37□□□□□ -0.759e-6■□□□□ 9.1
CDC40O60508 IST1-211ENST00000537613 894 ntTSL 210.24□□□□□ -0.779e-6■□□□□ 9.1
CDC40O60508 IST1-201ENST00000329908 2356 ntTSL 1 (best) BASIC10.23□□□□□ -0.779e-6■□□□□ 9.1
CDC40O60508 ARHGAP12-202ENST00000344936 4128 ntAPPRIS P3 TSL 1 (best) BASIC10.2□□□□□ -0.789e-6■□□□□ 9.1
CDC40O60508 IST1-213ENST00000538565 1245 ntTSL 210.16□□□□□ -0.789e-6■□□□□ 9.1
CDC40O60508 IST1-206ENST00000456820 2031 ntTSL 59.97□□□□□ -0.819e-6■□□□□ 9.1
CDC40O60508 HM13-204ENST00000398174 3792 ntTSL 1 (best) BASIC9.7□□□□□ -0.869e-6■□□□□ 9.1
CDC40O60508 IST1-202ENST00000378798 2255 ntTSL 1 (best) BASIC9.65□□□□□ -0.869e-6■□□□□ 9.1
CDC40O60508 HAL-201ENST00000261208 3913 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.879e-6■□□□□ 9.1
CDC40O60508 IST1-207ENST00000534994 674 ntTSL 59.54□□□□□ -0.889e-6■□□□□ 9.1
CDC40O60508 HM13-214ENST00000472128 865 ntTSL 59.25□□□□□ -0.939e-6■□□□□ 9.1
CDC40O60508 IST1-216ENST00000539186 542 ntTSL 49.24□□□□□ -0.939e-6■□□□□ 9.1
CDC40O60508 HAL-211ENST00000552509 1026 ntTSL 39.23□□□□□ -0.939e-6■□□□□ 9.1
CDC40O60508 ADGRD1-205ENST00000535015 2776 ntTSL 1 (best) BASIC9.1□□□□□ -0.959e-6■□□□□ 9.1
CDC40O60508 HAL-203ENST00000541929 3846 ntTSL 2 BASIC9□□□□□ -0.979e-6■□□□□ 9.1
CDC40O60508 GRB7-207ENST00000473071 467 ntTSL 28.78□□□□□ -19e-6■□□□□ 9.1
CDC40O60508 IST1-226ENST00000606369 3583 ntTSL 2 BASIC8.17□□□□□ -1.19e-6■□□□□ 9.1
Retrieved 100 of 5,364 protein–RNA pairs in 276.8 ms