Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SDCBPO00560 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SDCBPO00560 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC17.82■□□□□ 0.44
SDCBPO00560 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SDCBPO00560 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC17.82■□□□□ 0.44
SDCBPO00560 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC17.82■□□□□ 0.44
SDCBPO00560 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SDCBPO00560 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SDCBPO00560 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SDCBPO00560 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SDCBPO00560 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC17.82■□□□□ 0.44
SDCBPO00560 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
SDCBPO00560 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SDCBPO00560 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
SDCBPO00560 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC17.82■□□□□ 0.44
SDCBPO00560 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SDCBPO00560 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SDCBPO00560 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SDCBPO00560 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
SDCBPO00560 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
SDCBPO00560 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SDCBPO00560 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SDCBPO00560 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
SDCBPO00560 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SDCBPO00560 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SDCBPO00560 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC17.81■□□□□ 0.44
SDCBPO00560 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SDCBPO00560 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC17.81■□□□□ 0.44
SDCBPO00560 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
SDCBPO00560 FEM1AP1-201ENST00000431297 1995 ntBASIC17.8■□□□□ 0.44
SDCBPO00560 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SDCBPO00560 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SDCBPO00560 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SDCBPO00560 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SDCBPO00560 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC17.8■□□□□ 0.44
SDCBPO00560 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SDCBPO00560 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC17.8■□□□□ 0.44
SDCBPO00560 AL136162.1-201ENST00000607711 1078 ntBASIC17.8■□□□□ 0.44
SDCBPO00560 OXCT2P1-201ENST00000447263 1535 ntBASIC17.8■□□□□ 0.44
SDCBPO00560 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC17.8■□□□□ 0.44
SDCBPO00560 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SDCBPO00560 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SDCBPO00560 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC17.8■□□□□ 0.44
SDCBPO00560 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
SDCBPO00560 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SDCBPO00560 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SDCBPO00560 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC17.8■□□□□ 0.44
SDCBPO00560 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SDCBPO00560 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC17.79■□□□□ 0.44
SDCBPO00560 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
SDCBPO00560 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
SDCBPO00560 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
SDCBPO00560 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SDCBPO00560 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
SDCBPO00560 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SDCBPO00560 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
SDCBPO00560 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC17.79■□□□□ 0.44
SDCBPO00560 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC17.79■□□□□ 0.44
SDCBPO00560 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC17.79■□□□□ 0.44
SDCBPO00560 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SDCBPO00560 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
SDCBPO00560 MIR4767-201ENST00000582827 78 ntBASIC17.79■□□□□ 0.44
SDCBPO00560 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC17.79■□□□□ 0.44
SDCBPO00560 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC17.79■□□□□ 0.44
SDCBPO00560 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SDCBPO00560 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
SDCBPO00560 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SDCBPO00560 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SDCBPO00560 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SDCBPO00560 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SDCBPO00560 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SDCBPO00560 AL049796.1-201ENST00000565336 1766 ntBASIC17.79■□□□□ 0.44
SDCBPO00560 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
SDCBPO00560 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
SDCBPO00560 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC17.78■□□□□ 0.44
SDCBPO00560 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SDCBPO00560 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC17.78■□□□□ 0.44
SDCBPO00560 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SDCBPO00560 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SDCBPO00560 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC17.78■□□□□ 0.44
SDCBPO00560 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC17.78■□□□□ 0.44
SDCBPO00560 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SDCBPO00560 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SDCBPO00560 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SDCBPO00560 AP005435.1-201ENST00000529293 1178 ntBASIC17.78■□□□□ 0.44
SDCBPO00560 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC17.78■□□□□ 0.44
SDCBPO00560 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SDCBPO00560 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SDCBPO00560 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC17.78■□□□□ 0.44
SDCBPO00560 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SDCBPO00560 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
SDCBPO00560 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SDCBPO00560 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC17.78■□□□□ 0.44
SDCBPO00560 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SDCBPO00560 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
SDCBPO00560 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
SDCBPO00560 AC135279.3-201ENST00000610945 1311 ntBASIC17.77■□□□□ 0.44
SDCBPO00560 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC17.77■□□□□ 0.44
SDCBPO00560 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC17.77■□□□□ 0.44
SDCBPO00560 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC17.77■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms