Protein–RNA interactions for Protein: A0A0B4J263

TRAV39, T-cell receptor alpha variable 39 (Fragment), humanhuman

Predictions only

Length 110 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV39A0A0B4J263 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRAV39A0A0B4J263 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRAV39A0A0B4J263 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRAV39A0A0B4J263 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
TRAV39A0A0B4J263 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRAV39A0A0B4J263 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
TRAV39A0A0B4J263 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC17.6■□□□□ 0.41
TRAV39A0A0B4J263 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRAV39A0A0B4J263 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC17.6■□□□□ 0.41
TRAV39A0A0B4J263 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRAV39A0A0B4J263 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TRAV39A0A0B4J263 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
TRAV39A0A0B4J263 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC17.6■□□□□ 0.41
TRAV39A0A0B4J263 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
TRAV39A0A0B4J263 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TRAV39A0A0B4J263 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC17.6■□□□□ 0.41
TRAV39A0A0B4J263 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRAV39A0A0B4J263 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRAV39A0A0B4J263 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC17.59■□□□□ 0.41
TRAV39A0A0B4J263 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV39A0A0B4J263 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC17.59■□□□□ 0.41
TRAV39A0A0B4J263 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC17.59■□□□□ 0.41
TRAV39A0A0B4J263 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
TRAV39A0A0B4J263 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC17.59■□□□□ 0.41
TRAV39A0A0B4J263 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
TRAV39A0A0B4J263 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV39A0A0B4J263 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV39A0A0B4J263 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC17.59■□□□□ 0.41
TRAV39A0A0B4J263 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV39A0A0B4J263 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV39A0A0B4J263 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC17.59■□□□□ 0.41
TRAV39A0A0B4J263 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC17.59■□□□□ 0.41
TRAV39A0A0B4J263 STOX2-205ENST00000513034 807 ntTSL 3 BASIC17.59■□□□□ 0.41
TRAV39A0A0B4J263 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC17.59■□□□□ 0.41
TRAV39A0A0B4J263 AL139246.5-201ENST00000606645 996 ntBASIC17.59■□□□□ 0.41
TRAV39A0A0B4J263 RALB-208ENST00000631312 311 ntTSL 5 BASIC17.59■□□□□ 0.41
TRAV39A0A0B4J263 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV39A0A0B4J263 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
TRAV39A0A0B4J263 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
TRAV39A0A0B4J263 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
TRAV39A0A0B4J263 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.41
TRAV39A0A0B4J263 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
TRAV39A0A0B4J263 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC17.58■□□□□ 0.41
TRAV39A0A0B4J263 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
TRAV39A0A0B4J263 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
TRAV39A0A0B4J263 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
TRAV39A0A0B4J263 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRAV39A0A0B4J263 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC17.58■□□□□ 0.4
TRAV39A0A0B4J263 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRAV39A0A0B4J263 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRAV39A0A0B4J263 AC091305.1-201ENST00000479476 895 ntBASIC17.58■□□□□ 0.4
TRAV39A0A0B4J263 SUDS3P1-201ENST00000505831 966 ntBASIC17.58■□□□□ 0.4
TRAV39A0A0B4J263 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC17.58■□□□□ 0.4
TRAV39A0A0B4J263 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
TRAV39A0A0B4J263 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC17.58■□□□□ 0.4
TRAV39A0A0B4J263 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
TRAV39A0A0B4J263 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
TRAV39A0A0B4J263 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC17.58■□□□□ 0.4
TRAV39A0A0B4J263 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC17.58■□□□□ 0.4
TRAV39A0A0B4J263 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRAV39A0A0B4J263 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRAV39A0A0B4J263 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TRAV39A0A0B4J263 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRAV39A0A0B4J263 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC17.57■□□□□ 0.4
TRAV39A0A0B4J263 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRAV39A0A0B4J263 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRAV39A0A0B4J263 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRAV39A0A0B4J263 EBPL-204ENST00000378272 766 ntTSL 3 BASIC17.57■□□□□ 0.4
TRAV39A0A0B4J263 MIR572-201ENST00000384983 95 ntBASIC17.57■□□□□ 0.4
TRAV39A0A0B4J263 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC17.57■□□□□ 0.4
TRAV39A0A0B4J263 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC17.57■□□□□ 0.4
TRAV39A0A0B4J263 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
TRAV39A0A0B4J263 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRAV39A0A0B4J263 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRAV39A0A0B4J263 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRAV39A0A0B4J263 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TRAV39A0A0B4J263 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRAV39A0A0B4J263 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRAV39A0A0B4J263 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRAV39A0A0B4J263 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
TRAV39A0A0B4J263 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TRAV39A0A0B4J263 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC17.57■□□□□ 0.4
TRAV39A0A0B4J263 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
TRAV39A0A0B4J263 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC17.57■□□□□ 0.4
TRAV39A0A0B4J263 AC055733.4-201ENST00000638462 1354 ntBASIC17.56■□□□□ 0.4
TRAV39A0A0B4J263 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TRAV39A0A0B4J263 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC17.56■□□□□ 0.4
TRAV39A0A0B4J263 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRAV39A0A0B4J263 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRAV39A0A0B4J263 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRAV39A0A0B4J263 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC17.56■□□□□ 0.4
TRAV39A0A0B4J263 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC17.56■□□□□ 0.4
TRAV39A0A0B4J263 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC17.56■□□□□ 0.4
TRAV39A0A0B4J263 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TRAV39A0A0B4J263 BX005040.4-201ENST00000637145 1518 ntBASIC17.56■□□□□ 0.4
TRAV39A0A0B4J263 AL157384.1-201ENST00000445995 2473 ntBASIC17.56■□□□□ 0.4
TRAV39A0A0B4J263 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
TRAV39A0A0B4J263 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
TRAV39A0A0B4J263 AC009237.3-201ENST00000393279 1427 ntBASIC17.55■□□□□ 0.4
TRAV39A0A0B4J263 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms