Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC28BQ9BUN5 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC20.48■□□□□ 0.87
CCDC28BQ9BUN5 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC28BQ9BUN5 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC28BQ9BUN5 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC28BQ9BUN5 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC20.47■□□□□ 0.87
CCDC28BQ9BUN5 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC20.47■□□□□ 0.87
CCDC28BQ9BUN5 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
CCDC28BQ9BUN5 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC28BQ9BUN5 MIR3181-201ENST00000578512 73 ntBASIC20.47■□□□□ 0.87
CCDC28BQ9BUN5 AC099791.2-201ENST00000605725 427 ntBASIC20.47■□□□□ 0.87
CCDC28BQ9BUN5 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC28BQ9BUN5 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC20.47■□□□□ 0.87
CCDC28BQ9BUN5 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC20.47■□□□□ 0.87
CCDC28BQ9BUN5 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC28BQ9BUN5 AC006128.1-201ENST00000624704 1661 ntBASIC20.47■□□□□ 0.87
CCDC28BQ9BUN5 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC20.47■□□□□ 0.87
CCDC28BQ9BUN5 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC20.47■□□□□ 0.87
CCDC28BQ9BUN5 ME2-216ENST00000639850 2331 ntTSL 5 BASIC20.47■□□□□ 0.87
CCDC28BQ9BUN5 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC20.46■□□□□ 0.87
CCDC28BQ9BUN5 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC20.46■□□□□ 0.87
CCDC28BQ9BUN5 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC20.46■□□□□ 0.87
CCDC28BQ9BUN5 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
CCDC28BQ9BUN5 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC28BQ9BUN5 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC20.46■□□□□ 0.87
CCDC28BQ9BUN5 AP004607.7-201ENST00000527152 1677 ntBASIC20.46■□□□□ 0.87
CCDC28BQ9BUN5 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
CCDC28BQ9BUN5 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC20.46■□□□□ 0.87
CCDC28BQ9BUN5 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC20.46■□□□□ 0.87
CCDC28BQ9BUN5 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC28BQ9BUN5 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC20.46■□□□□ 0.87
CCDC28BQ9BUN5 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC28BQ9BUN5 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC28BQ9BUN5 AP005212.1-201ENST00000581547 1997 ntBASIC20.46■□□□□ 0.87
CCDC28BQ9BUN5 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC28BQ9BUN5 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
CCDC28BQ9BUN5 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
CCDC28BQ9BUN5 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC20.45■□□□□ 0.87
CCDC28BQ9BUN5 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC28BQ9BUN5 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC20.45■□□□□ 0.86
CCDC28BQ9BUN5 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC28BQ9BUN5 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
CCDC28BQ9BUN5 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC28BQ9BUN5 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
CCDC28BQ9BUN5 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC28BQ9BUN5 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC20.45■□□□□ 0.86
CCDC28BQ9BUN5 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC20.45■□□□□ 0.86
CCDC28BQ9BUN5 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
CCDC28BQ9BUN5 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC28BQ9BUN5 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC28BQ9BUN5 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC28BQ9BUN5 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC20.45■□□□□ 0.86
CCDC28BQ9BUN5 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC28BQ9BUN5 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC20.45■□□□□ 0.86
CCDC28BQ9BUN5 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC28BQ9BUN5 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC28BQ9BUN5 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC28BQ9BUN5 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC28BQ9BUN5 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC20.44■□□□□ 0.86
CCDC28BQ9BUN5 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
CCDC28BQ9BUN5 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC28BQ9BUN5 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC28BQ9BUN5 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC28BQ9BUN5 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC28BQ9BUN5 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC20.44■□□□□ 0.86
CCDC28BQ9BUN5 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC28BQ9BUN5 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC20.44■□□□□ 0.86
CCDC28BQ9BUN5 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
CCDC28BQ9BUN5 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC20.44■□□□□ 0.86
CCDC28BQ9BUN5 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCDC28BQ9BUN5 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CCDC28BQ9BUN5 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC20.43■□□□□ 0.86
CCDC28BQ9BUN5 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC20.43■□□□□ 0.86
CCDC28BQ9BUN5 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC20.43■□□□□ 0.86
CCDC28BQ9BUN5 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC20.43■□□□□ 0.86
CCDC28BQ9BUN5 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCDC28BQ9BUN5 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCDC28BQ9BUN5 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC20.43■□□□□ 0.86
CCDC28BQ9BUN5 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCDC28BQ9BUN5 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC20.43■□□□□ 0.86
CCDC28BQ9BUN5 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC20.43■□□□□ 0.86
CCDC28BQ9BUN5 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CCDC28BQ9BUN5 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC20.42■□□□□ 0.86
CCDC28BQ9BUN5 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC28BQ9BUN5 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC28BQ9BUN5 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC20.42■□□□□ 0.86
CCDC28BQ9BUN5 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC20.42■□□□□ 0.86
CCDC28BQ9BUN5 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC28BQ9BUN5 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC28BQ9BUN5 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC28BQ9BUN5 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC28BQ9BUN5 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC28BQ9BUN5 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC28BQ9BUN5 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC28BQ9BUN5 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC20.42■□□□□ 0.86
CCDC28BQ9BUN5 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC28BQ9BUN5 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC28BQ9BUN5 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC20.42■□□□□ 0.86
CCDC28BQ9BUN5 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC28BQ9BUN5 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms