Protein–RNA interactions for Protein: Q8WWV3

RTN4IP1, Reticulon-4-interacting protein 1, mitochondrial, humanhuman

Predicted RBP Predictions only

Length 396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4IP1Q8WWV3 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
RTN4IP1Q8WWV3 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
RTN4IP1Q8WWV3 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
RTN4IP1Q8WWV3 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
RTN4IP1Q8WWV3 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
RTN4IP1Q8WWV3 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
RTN4IP1Q8WWV3 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
RTN4IP1Q8WWV3 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
RTN4IP1Q8WWV3 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
RTN4IP1Q8WWV3 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
RTN4IP1Q8WWV3 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
RTN4IP1Q8WWV3 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RTN4IP1Q8WWV3 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RTN4IP1Q8WWV3 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
RTN4IP1Q8WWV3 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RTN4IP1Q8WWV3 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RTN4IP1Q8WWV3 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RTN4IP1Q8WWV3 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RTN4IP1Q8WWV3 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RTN4IP1Q8WWV3 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RTN4IP1Q8WWV3 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC17.68■□□□□ 0.42
RTN4IP1Q8WWV3 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
RTN4IP1Q8WWV3 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
RTN4IP1Q8WWV3 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
RTN4IP1Q8WWV3 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC17.68■□□□□ 0.42
RTN4IP1Q8WWV3 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RTN4IP1Q8WWV3 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
RTN4IP1Q8WWV3 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC17.68■□□□□ 0.42
RTN4IP1Q8WWV3 SLC47A1P1-202ENST00000449666 945 ntBASIC17.68■□□□□ 0.42
RTN4IP1Q8WWV3 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RTN4IP1Q8WWV3 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RTN4IP1Q8WWV3 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC17.68■□□□□ 0.42
RTN4IP1Q8WWV3 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
RTN4IP1Q8WWV3 USP45-205ENST00000472914 1617 ntTSL 5 BASIC17.68■□□□□ 0.42
RTN4IP1Q8WWV3 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC17.68■□□□□ 0.42
RTN4IP1Q8WWV3 OXCT2P1-201ENST00000447263 1535 ntBASIC17.67■□□□□ 0.42
RTN4IP1Q8WWV3 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC17.67■□□□□ 0.42
RTN4IP1Q8WWV3 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
RTN4IP1Q8WWV3 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
RTN4IP1Q8WWV3 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
RTN4IP1Q8WWV3 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
RTN4IP1Q8WWV3 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RTN4IP1Q8WWV3 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RTN4IP1Q8WWV3 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC17.67■□□□□ 0.42
RTN4IP1Q8WWV3 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC17.67■□□□□ 0.42
RTN4IP1Q8WWV3 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC17.67■□□□□ 0.42
RTN4IP1Q8WWV3 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC17.67■□□□□ 0.42
RTN4IP1Q8WWV3 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC17.67■□□□□ 0.42
RTN4IP1Q8WWV3 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC17.67■□□□□ 0.42
RTN4IP1Q8WWV3 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC17.67■□□□□ 0.42
RTN4IP1Q8WWV3 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC17.67■□□□□ 0.42
RTN4IP1Q8WWV3 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RTN4IP1Q8WWV3 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
RTN4IP1Q8WWV3 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RTN4IP1Q8WWV3 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC17.67■□□□□ 0.42
RTN4IP1Q8WWV3 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
RTN4IP1Q8WWV3 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RTN4IP1Q8WWV3 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC17.66■□□□□ 0.42
RTN4IP1Q8WWV3 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC17.66■□□□□ 0.42
RTN4IP1Q8WWV3 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RTN4IP1Q8WWV3 OR7E47P-201ENST00000546390 1422 ntBASIC17.66■□□□□ 0.42
RTN4IP1Q8WWV3 AC092667.1-201ENST00000434301 2586 ntBASIC17.66■□□□□ 0.42
RTN4IP1Q8WWV3 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
RTN4IP1Q8WWV3 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
RTN4IP1Q8WWV3 SNX3-202ENST00000349379 890 ntTSL 2 BASIC17.66■□□□□ 0.42
RTN4IP1Q8WWV3 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC17.66■□□□□ 0.42
RTN4IP1Q8WWV3 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC17.66■□□□□ 0.42
RTN4IP1Q8WWV3 AC087239.1-201ENST00000622671 572 ntBASIC17.66■□□□□ 0.42
RTN4IP1Q8WWV3 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RTN4IP1Q8WWV3 LINC01006-201ENST00000333319 2292 ntBASIC17.66■□□□□ 0.42
RTN4IP1Q8WWV3 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RTN4IP1Q8WWV3 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
RTN4IP1Q8WWV3 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
RTN4IP1Q8WWV3 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
RTN4IP1Q8WWV3 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RTN4IP1Q8WWV3 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
RTN4IP1Q8WWV3 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
RTN4IP1Q8WWV3 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
RTN4IP1Q8WWV3 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
RTN4IP1Q8WWV3 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
RTN4IP1Q8WWV3 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
RTN4IP1Q8WWV3 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
RTN4IP1Q8WWV3 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC17.65■□□□□ 0.42
RTN4IP1Q8WWV3 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
RTN4IP1Q8WWV3 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
RTN4IP1Q8WWV3 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC17.65■□□□□ 0.42
RTN4IP1Q8WWV3 AL121603.2-201ENST00000557373 2117 ntBASIC17.65■□□□□ 0.42
RTN4IP1Q8WWV3 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
RTN4IP1Q8WWV3 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
RTN4IP1Q8WWV3 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC17.65■□□□□ 0.42
RTN4IP1Q8WWV3 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
RTN4IP1Q8WWV3 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
RTN4IP1Q8WWV3 PBX2P1-201ENST00000493219 1291 ntBASIC17.65■□□□□ 0.42
RTN4IP1Q8WWV3 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
RTN4IP1Q8WWV3 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
RTN4IP1Q8WWV3 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC17.65■□□□□ 0.42
RTN4IP1Q8WWV3 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
RTN4IP1Q8WWV3 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
RTN4IP1Q8WWV3 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
RTN4IP1Q8WWV3 DYM-203ENST00000442713 2147 ntTSL 2 BASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms