Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC20.93■□□□□ 0.94
ZNF549Q6P9A3 NARF-205ENST00000412079 1760 ntTSL 5 BASIC20.93■□□□□ 0.94
ZNF549Q6P9A3 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
ZNF549Q6P9A3 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC20.93■□□□□ 0.94
ZNF549Q6P9A3 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
ZNF549Q6P9A3 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
ZNF549Q6P9A3 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
ZNF549Q6P9A3 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
ZNF549Q6P9A3 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC20.92■□□□□ 0.94
ZNF549Q6P9A3 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC20.92■□□□□ 0.94
ZNF549Q6P9A3 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
ZNF549Q6P9A3 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
ZNF549Q6P9A3 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
ZNF549Q6P9A3 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
ZNF549Q6P9A3 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
ZNF549Q6P9A3 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
ZNF549Q6P9A3 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
ZNF549Q6P9A3 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
ZNF549Q6P9A3 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
ZNF549Q6P9A3 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
ZNF549Q6P9A3 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC20.91■□□□□ 0.94
ZNF549Q6P9A3 NT5C3AP1-201ENST00000394500 1012 ntBASIC20.91■□□□□ 0.94
ZNF549Q6P9A3 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC20.91■□□□□ 0.94
ZNF549Q6P9A3 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
ZNF549Q6P9A3 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
ZNF549Q6P9A3 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC20.91■□□□□ 0.94
ZNF549Q6P9A3 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
ZNF549Q6P9A3 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC20.91■□□□□ 0.94
ZNF549Q6P9A3 AL358852.1-201ENST00000623174 1268 ntBASIC20.91■□□□□ 0.94
ZNF549Q6P9A3 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
ZNF549Q6P9A3 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
ZNF549Q6P9A3 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
ZNF549Q6P9A3 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
ZNF549Q6P9A3 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC20.9■□□□□ 0.94
ZNF549Q6P9A3 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
ZNF549Q6P9A3 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC20.9■□□□□ 0.94
ZNF549Q6P9A3 IRS3P-201ENST00000223076 1006 ntBASIC20.9■□□□□ 0.94
ZNF549Q6P9A3 MTURN-203ENST00000409688 843 ntTSL 2 BASIC20.9■□□□□ 0.94
ZNF549Q6P9A3 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC20.9■□□□□ 0.94
ZNF549Q6P9A3 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
ZNF549Q6P9A3 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
ZNF549Q6P9A3 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC20.9■□□□□ 0.94
ZNF549Q6P9A3 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC20.9■□□□□ 0.94
ZNF549Q6P9A3 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
ZNF549Q6P9A3 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
ZNF549Q6P9A3 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC20.89■□□□□ 0.94
ZNF549Q6P9A3 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC20.89■□□□□ 0.94
ZNF549Q6P9A3 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC20.89■□□□□ 0.94
ZNF549Q6P9A3 PALM-207ENST00000590161 2137 ntTSL 4 BASIC20.89■□□□□ 0.94
ZNF549Q6P9A3 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC20.89■□□□□ 0.93
ZNF549Q6P9A3 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
ZNF549Q6P9A3 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
ZNF549Q6P9A3 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
ZNF549Q6P9A3 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC20.89■□□□□ 0.93
ZNF549Q6P9A3 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
ZNF549Q6P9A3 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
ZNF549Q6P9A3 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
ZNF549Q6P9A3 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
ZNF549Q6P9A3 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.93
ZNF549Q6P9A3 STX5-203ENST00000394690 1568 ntTSL 5 BASIC20.89■□□□□ 0.93
ZNF549Q6P9A3 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
ZNF549Q6P9A3 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
ZNF549Q6P9A3 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
ZNF549Q6P9A3 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC20.88■□□□□ 0.93
ZNF549Q6P9A3 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
ZNF549Q6P9A3 FXN-202ENST00000396364 980 ntTSL 5 BASIC20.88■□□□□ 0.93
ZNF549Q6P9A3 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
ZNF549Q6P9A3 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC20.88■□□□□ 0.93
ZNF549Q6P9A3 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
ZNF549Q6P9A3 PARN-205ENST00000539279 1557 ntTSL 2 BASIC20.88■□□□□ 0.93
ZNF549Q6P9A3 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
ZNF549Q6P9A3 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
ZNF549Q6P9A3 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
ZNF549Q6P9A3 AL049796.1-201ENST00000565336 1766 ntBASIC20.87■□□□□ 0.93
ZNF549Q6P9A3 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC20.87■□□□□ 0.93
ZNF549Q6P9A3 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
ZNF549Q6P9A3 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
ZNF549Q6P9A3 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC20.87■□□□□ 0.93
ZNF549Q6P9A3 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC20.87■□□□□ 0.93
ZNF549Q6P9A3 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
ZNF549Q6P9A3 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
ZNF549Q6P9A3 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
ZNF549Q6P9A3 NME4-202ENST00000382940 766 ntTSL 3 BASIC20.87■□□□□ 0.93
ZNF549Q6P9A3 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
ZNF549Q6P9A3 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
ZNF549Q6P9A3 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC20.87■□□□□ 0.93
ZNF549Q6P9A3 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC20.87■□□□□ 0.93
ZNF549Q6P9A3 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
ZNF549Q6P9A3 NME4-211ENST00000620944 1193 ntTSL 2 BASIC20.87■□□□□ 0.93
ZNF549Q6P9A3 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
ZNF549Q6P9A3 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
ZNF549Q6P9A3 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
ZNF549Q6P9A3 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
ZNF549Q6P9A3 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
ZNF549Q6P9A3 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
ZNF549Q6P9A3 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
ZNF549Q6P9A3 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
ZNF549Q6P9A3 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
ZNF549Q6P9A3 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
ZNF549Q6P9A3 CPT2-209ENST00000636935 803 ntTSL 5 BASIC20.86■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms