Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 AC003102.1-202ENST00000563394 1796 ntBASIC20.48■□□□□ 0.87
PCNAP12004 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PCNAP12004 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PCNAP12004 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC20.48■□□□□ 0.87
PCNAP12004 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PCNAP12004 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC20.47■□□□□ 0.87
PCNAP12004 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
PCNAP12004 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PCNAP12004 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
PCNAP12004 MIR638-201ENST00000385237 100 ntBASIC20.47■□□□□ 0.87
PCNAP12004 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC20.47■□□□□ 0.87
PCNAP12004 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC20.47■□□□□ 0.87
PCNAP12004 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC20.47■□□□□ 0.87
PCNAP12004 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
PCNAP12004 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PCNAP12004 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
PCNAP12004 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PCNAP12004 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PCNAP12004 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PCNAP12004 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PCNAP12004 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC20.46■□□□□ 0.87
PCNAP12004 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
PCNAP12004 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC20.46■□□□□ 0.87
PCNAP12004 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PCNAP12004 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
PCNAP12004 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PCNAP12004 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PCNAP12004 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
PCNAP12004 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
PCNAP12004 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC20.46■□□□□ 0.87
PCNAP12004 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
PCNAP12004 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PCNAP12004 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
PCNAP12004 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
PCNAP12004 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PCNAP12004 Z98882.1-201ENST00000622160 2253 ntBASIC20.46■□□□□ 0.87
PCNAP12004 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PCNAP12004 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PCNAP12004 AC009237.3-201ENST00000393279 1427 ntBASIC20.45■□□□□ 0.86
PCNAP12004 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
PCNAP12004 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC20.45■□□□□ 0.86
PCNAP12004 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC20.45■□□□□ 0.86
PCNAP12004 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
PCNAP12004 BX005040.4-201ENST00000637145 1518 ntBASIC20.45■□□□□ 0.86
PCNAP12004 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
PCNAP12004 AC105265.2-201ENST00000467189 838 ntBASIC20.45■□□□□ 0.86
PCNAP12004 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
PCNAP12004 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC20.45■□□□□ 0.86
PCNAP12004 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PCNAP12004 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PCNAP12004 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC20.45■□□□□ 0.86
PCNAP12004 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
PCNAP12004 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PCNAP12004 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PCNAP12004 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC20.45■□□□□ 0.86
PCNAP12004 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PCNAP12004 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PCNAP12004 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PCNAP12004 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC20.45■□□□□ 0.86
PCNAP12004 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
PCNAP12004 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
PCNAP12004 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PCNAP12004 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
PCNAP12004 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PCNAP12004 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
PCNAP12004 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC20.44■□□□□ 0.86
PCNAP12004 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC20.44■□□□□ 0.86
PCNAP12004 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PCNAP12004 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC20.44■□□□□ 0.86
PCNAP12004 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PCNAP12004 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC20.44■□□□□ 0.86
PCNAP12004 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC20.44■□□□□ 0.86
PCNAP12004 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC20.44■□□□□ 0.86
PCNAP12004 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PCNAP12004 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
PCNAP12004 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PCNAP12004 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PCNAP12004 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
PCNAP12004 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
PCNAP12004 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC20.43■□□□□ 0.86
PCNAP12004 RHOF-204ENST00000537265 699 ntTSL 2 BASIC20.43■□□□□ 0.86
PCNAP12004 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
PCNAP12004 AC012414.1-201ENST00000556676 535 ntBASIC20.43■□□□□ 0.86
PCNAP12004 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PCNAP12004 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PCNAP12004 MPST-204ENST00000404393 1329 ntTSL 5 BASIC20.43■□□□□ 0.86
PCNAP12004 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC20.43■□□□□ 0.86
PCNAP12004 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC20.43■□□□□ 0.86
PCNAP12004 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
PCNAP12004 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PCNAP12004 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
PCNAP12004 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PCNAP12004 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC20.43■□□□□ 0.86
PCNAP12004 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC20.43■□□□□ 0.86
PCNAP12004 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PCNAP12004 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
PCNAP12004 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
PCNAP12004 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
PCNAP12004 MFF-203ENST00000349901 1716 ntTSL 2 BASIC20.42■□□□□ 0.86
PCNAP12004 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 14.6 ms