Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC28.12■■■□□ 2.09
CSB-PGBD3P0DP91 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
CSB-PGBD3P0DP91 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
CSB-PGBD3P0DP91 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC28.11■■■□□ 2.09
CSB-PGBD3P0DP91 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC28.11■■■□□ 2.09
CSB-PGBD3P0DP91 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
CSB-PGBD3P0DP91 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
CSB-PGBD3P0DP91 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC28.11■■■□□ 2.09
CSB-PGBD3P0DP91 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC28.11■■■□□ 2.09
CSB-PGBD3P0DP91 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC28.11■■■□□ 2.09
CSB-PGBD3P0DP91 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC28.11■■■□□ 2.09
CSB-PGBD3P0DP91 PEX7-202ENST00000367756 680 ntTSL 3 BASIC28.11■■■□□ 2.09
CSB-PGBD3P0DP91 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC28.11■■■□□ 2.09
CSB-PGBD3P0DP91 AL355472.2-201ENST00000422958 438 ntBASIC28.11■■■□□ 2.09
CSB-PGBD3P0DP91 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC28.11■■■□□ 2.09
CSB-PGBD3P0DP91 GATS-209ENST00000454084 1030 ntTSL 3 BASIC28.11■■■□□ 2.09
CSB-PGBD3P0DP91 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC28.11■■■□□ 2.09
CSB-PGBD3P0DP91 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC28.11■■■□□ 2.09
CSB-PGBD3P0DP91 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
CSB-PGBD3P0DP91 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC28.1■■■□□ 2.09
CSB-PGBD3P0DP91 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC28.1■■■□□ 2.09
CSB-PGBD3P0DP91 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC28.1■■■□□ 2.09
CSB-PGBD3P0DP91 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
CSB-PGBD3P0DP91 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
CSB-PGBD3P0DP91 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
CSB-PGBD3P0DP91 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC28.09■■■□□ 2.09
CSB-PGBD3P0DP91 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
CSB-PGBD3P0DP91 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
CSB-PGBD3P0DP91 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
CSB-PGBD3P0DP91 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
CSB-PGBD3P0DP91 KRT17P1-201ENST00000399211 1546 ntBASIC28.09■■■□□ 2.09
CSB-PGBD3P0DP91 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC28.09■■■□□ 2.09
CSB-PGBD3P0DP91 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC28.09■■■□□ 2.09
CSB-PGBD3P0DP91 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC28.09■■■□□ 2.09
CSB-PGBD3P0DP91 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC28.09■■■□□ 2.09
CSB-PGBD3P0DP91 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC28.09■■■□□ 2.09
CSB-PGBD3P0DP91 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC28.09■■■□□ 2.09
CSB-PGBD3P0DP91 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC28.09■■■□□ 2.09
CSB-PGBD3P0DP91 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
CSB-PGBD3P0DP91 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
CSB-PGBD3P0DP91 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
CSB-PGBD3P0DP91 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC28.09■■■□□ 2.09
CSB-PGBD3P0DP91 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
CSB-PGBD3P0DP91 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC28.08■■■□□ 2.09
CSB-PGBD3P0DP91 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC28.08■■■□□ 2.09
CSB-PGBD3P0DP91 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
CSB-PGBD3P0DP91 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
CSB-PGBD3P0DP91 CD44-222ENST00000526025 1052 ntTSL 2 BASIC28.08■■■□□ 2.09
CSB-PGBD3P0DP91 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC28.08■■■□□ 2.09
CSB-PGBD3P0DP91 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
CSB-PGBD3P0DP91 AC139530.1-201ENST00000575312 1977 ntBASIC28.08■■■□□ 2.09
CSB-PGBD3P0DP91 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
CSB-PGBD3P0DP91 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC28.07■■■□□ 2.08
CSB-PGBD3P0DP91 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC28.07■■■□□ 2.08
CSB-PGBD3P0DP91 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
CSB-PGBD3P0DP91 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC28.07■■■□□ 2.08
CSB-PGBD3P0DP91 USP36-216ENST00000589424 970 ntTSL 5 BASIC28.07■■■□□ 2.08
CSB-PGBD3P0DP91 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC28.07■■■□□ 2.08
CSB-PGBD3P0DP91 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC28.07■■■□□ 2.08
CSB-PGBD3P0DP91 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC28.07■■■□□ 2.08
CSB-PGBD3P0DP91 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC28.07■■■□□ 2.08
CSB-PGBD3P0DP91 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC28.07■■■□□ 2.08
CSB-PGBD3P0DP91 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
CSB-PGBD3P0DP91 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
CSB-PGBD3P0DP91 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC28.06■■■□□ 2.08
CSB-PGBD3P0DP91 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
CSB-PGBD3P0DP91 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
CSB-PGBD3P0DP91 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC28.06■■■□□ 2.08
CSB-PGBD3P0DP91 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC28.06■■■□□ 2.08
CSB-PGBD3P0DP91 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC28.06■■■□□ 2.08
CSB-PGBD3P0DP91 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
CSB-PGBD3P0DP91 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC28.06■■■□□ 2.08
CSB-PGBD3P0DP91 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC28.06■■■□□ 2.08
CSB-PGBD3P0DP91 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
CSB-PGBD3P0DP91 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
CSB-PGBD3P0DP91 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC28.05■■■□□ 2.08
CSB-PGBD3P0DP91 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC28.05■■■□□ 2.08
CSB-PGBD3P0DP91 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC28.05■■■□□ 2.08
CSB-PGBD3P0DP91 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC28.05■■■□□ 2.08
CSB-PGBD3P0DP91 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC28.05■■■□□ 2.08
CSB-PGBD3P0DP91 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC28.05■■■□□ 2.08
CSB-PGBD3P0DP91 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
CSB-PGBD3P0DP91 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
CSB-PGBD3P0DP91 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
CSB-PGBD3P0DP91 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
CSB-PGBD3P0DP91 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC28.04■■■□□ 2.08
CSB-PGBD3P0DP91 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
CSB-PGBD3P0DP91 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC28.04■■■□□ 2.08
CSB-PGBD3P0DP91 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC28.04■■■□□ 2.08
CSB-PGBD3P0DP91 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC28.04■■■□□ 2.08
CSB-PGBD3P0DP91 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
CSB-PGBD3P0DP91 AC008550.1-201ENST00000511500 884 ntBASIC28.04■■■□□ 2.08
CSB-PGBD3P0DP91 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC28.04■■■□□ 2.08
CSB-PGBD3P0DP91 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC28.04■■■□□ 2.08
CSB-PGBD3P0DP91 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC28.04■■■□□ 2.08
CSB-PGBD3P0DP91 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
CSB-PGBD3P0DP91 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC28.03■■■□□ 2.08
CSB-PGBD3P0DP91 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
CSB-PGBD3P0DP91 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
CSB-PGBD3P0DP91 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC28.03■■■□□ 2.08
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms