Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC20.73■□□□□ 0.91
TRIM13O60858 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC20.73■□□□□ 0.91
TRIM13O60858 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC20.73■□□□□ 0.91
TRIM13O60858 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC20.73■□□□□ 0.91
TRIM13O60858 AC136469.2-201ENST00000623944 1028 ntBASIC20.73■□□□□ 0.91
TRIM13O60858 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC20.73■□□□□ 0.91
TRIM13O60858 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM13O60858 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
TRIM13O60858 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM13O60858 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM13O60858 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC20.72■□□□□ 0.91
TRIM13O60858 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC20.72■□□□□ 0.91
TRIM13O60858 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM13O60858 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC20.72■□□□□ 0.91
TRIM13O60858 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM13O60858 SLC47A1P1-202ENST00000449666 945 ntBASIC20.72■□□□□ 0.91
TRIM13O60858 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
TRIM13O60858 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC20.72■□□□□ 0.91
TRIM13O60858 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC20.72■□□□□ 0.91
TRIM13O60858 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC20.72■□□□□ 0.91
TRIM13O60858 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM13O60858 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
TRIM13O60858 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM13O60858 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM13O60858 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC20.72■□□□□ 0.91
TRIM13O60858 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM13O60858 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC20.72■□□□□ 0.91
TRIM13O60858 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM13O60858 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM13O60858 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM13O60858 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC20.71■□□□□ 0.91
TRIM13O60858 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM13O60858 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
TRIM13O60858 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM13O60858 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
TRIM13O60858 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
TRIM13O60858 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM13O60858 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM13O60858 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC20.71■□□□□ 0.91
TRIM13O60858 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM13O60858 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM13O60858 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.91
TRIM13O60858 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM13O60858 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM13O60858 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC20.7■□□□□ 0.9
TRIM13O60858 AC011298.3-201ENST00000615796 283 ntBASIC20.7■□□□□ 0.9
TRIM13O60858 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM13O60858 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC20.7■□□□□ 0.9
TRIM13O60858 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM13O60858 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM13O60858 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
TRIM13O60858 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM13O60858 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC20.7■□□□□ 0.9
TRIM13O60858 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC20.7■□□□□ 0.9
TRIM13O60858 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM13O60858 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC20.69■□□□□ 0.9
TRIM13O60858 ME2-216ENST00000639850 2331 ntTSL 5 BASIC20.69■□□□□ 0.9
TRIM13O60858 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM13O60858 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM13O60858 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
TRIM13O60858 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM13O60858 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC20.69■□□□□ 0.9
TRIM13O60858 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM13O60858 SRR-208ENST00000576848 588 ntTSL 4 BASIC20.69■□□□□ 0.9
TRIM13O60858 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM13O60858 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM13O60858 AC006128.1-201ENST00000624704 1661 ntBASIC20.69■□□□□ 0.9
TRIM13O60858 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM13O60858 NARF-205ENST00000412079 1760 ntTSL 5 BASIC20.69■□□□□ 0.9
TRIM13O60858 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC20.69■□□□□ 0.9
TRIM13O60858 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM13O60858 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM13O60858 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
TRIM13O60858 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM13O60858 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM13O60858 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM13O60858 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM13O60858 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC20.68■□□□□ 0.9
TRIM13O60858 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM13O60858 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM13O60858 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
TRIM13O60858 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC20.68■□□□□ 0.9
TRIM13O60858 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM13O60858 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM13O60858 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
TRIM13O60858 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM13O60858 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM13O60858 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM13O60858 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM13O60858 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC20.67■□□□□ 0.9
TRIM13O60858 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
TRIM13O60858 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM13O60858 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM13O60858 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
TRIM13O60858 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC20.67■□□□□ 0.9
TRIM13O60858 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC20.67■□□□□ 0.9
TRIM13O60858 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC20.67■□□□□ 0.9
TRIM13O60858 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM13O60858 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC20.67■□□□□ 0.9
TRIM13O60858 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms